Merge pull request #4 from epigen/partition-resource-support

allow to define the partition within the resources part of rules
epigen · Feb 22, 2023 · 9396fc5 · 9396fc5
2 parents 3c7602b + 1d6a104
commit 9396fc5
Show file tree

Hide file tree

Showing 2 changed files with 5 additions and 3 deletions.
diff --git a/cluster.config.yaml b/cluster.config.yaml
@@ -1,6 +1,6 @@
 __default__:
   error: "logs/logs_slurm/{rule}_{wildcards}.err"
   output: "logs/logs_slurm/{rule}_{wildcards}.out"
-  partition: "{params.partition}"
-  qos: "{params.partition}"
-  kill-on-invalid-dep: "yes"
+  partition: "shortq"
+  qos: "shortq"
+  kill-on-invalid-dep: "yes"
diff --git a/slurm-submit.py b/slurm-submit.py
@@ -20,6 +20,8 @@
     "mem": ("mem", "mem_mb", "ram", "memory"),
     "mem-per-cpu": ("mem-per-cpu", "mem_per_cpu", "mem_per_thread"),
     "nodes": ("nodes", "nnodes"),
+    "partition": ("partition",),
+    "qos": ("partition", ),
 }
 
 # parse job