Migrated 'future' repo to 'futureverse' org

futureverse · Nov 12, 2024 · e33ec61 · e33ec61
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diff --git a/.github/ISSUE_TEMPLATE/bug_report.md b/.github/ISSUE_TEMPLATE/bug_report.md
@@ -6,7 +6,7 @@ labels: 'bug'
 assignees: ''
 
 ---
-(Please use <https://github.com/HenrikBengtsson/future/discussions> for Q&A)
+(Please use <https://github.com/futureverse/future/discussions> for Q&A)
 
 
 **Describe the bug**

diff --git a/.github/ISSUE_TEMPLATE/config.yml b/.github/ISSUE_TEMPLATE/config.yml
@@ -1,5 +1,5 @@
 lank_issues_enabled: true
 contact_links:
   - name: Support & Discussions
-    url: https://github.com/HenrikBengtsson/future/discussions/
+    url: https://github.com/futureverse/future/discussions/
     about: Got a question? Something is not working? Want to share an idea?
diff --git a/.github/ISSUE_TEMPLATE/feature_request.md b/.github/ISSUE_TEMPLATE/feature_request.md
@@ -6,7 +6,7 @@ labels: 'feature request'
 assignees: ''
 
 ---
-(Please use <https://github.com/HenrikBengtsson/future/discussions> for Q&A)
+(Please use <https://github.com/futureverse/future/discussions> for Q&A)
 
 **Wish or feature request**
 

diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml
@@ -47,8 +47,6 @@ jobs:
       _R_COMPARE_LANG_OBJECTS: eqonly
       ## R CMD check
       _R_CHECK_CRAN_INCOMING_: false
-      _R_CHECK_LENGTH_1_CONDITION_: true
-      _R_CHECK_LENGTH_1_LOGIC2_: true
       _R_CHECK_MATRIX_DATA_: true
       _R_CHECK_SUGGESTS_ONLY_: true
       _R_CHECK_THINGS_IN_TEMP_DIR_: true

diff --git a/.github/workflows/covr.yaml b/.github/workflows/covr.yaml
diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml
@@ -0,0 +1,56 @@
+on: [push]
+
+name: test-coverage.yaml
+
+permissions: read-all
+
+jobs:
+  test-coverage:
+    runs-on: ubuntu-latest
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: Assert CODECOV_TOKEN is set
+        run: |
+          if [[ -z "${{secrets.CODECOV_TOKEN}}" ]]; then
+            >&2 echo "::error::ERROR: 'secrets.CODECOV_TOKEN' not set"
+            exit 1
+          fi
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::covr, any::xml2
+          needs: coverage
+
+      - name: Test coverage
+        run: |
+          cov <- covr::package_coverage(
+            quiet = FALSE,
+            clean = FALSE,
+            install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package")
+          )
+          print(cov)
+          covr::to_cobertura(cov)
+        shell: Rscript {0}
+
+      - uses: codecov/codecov-action@v4
+        with:
+          fail_ci_if_error: ${{ github.event_name != 'pull_request' && true || false }}
+          file: ./cobertura.xml
+          plugin: noop
+          disable_search: true
+          token: ${{ secrets.CODECOV_TOKEN }}
+
+      - name: Upload test results
+        if: failure()
+        uses: actions/upload-artifact@v4
+        with:
+          name: coverage-test-failures
+          path: ${{ runner.temp }}/package
diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md
@@ -1,8 +1,8 @@
 
 # Contributing to the 'future' package
 
-This Git repository uses the [Git Flow](https://nvie.com/posts/a-successful-git-branching-model/) branching model (the [`git flow`](https://github.com/petervanderdoes/gitflow-avh) extension is useful for this).  The [`develop`](https://github.com/HenrikBengtsson/future/tree/develop) branch contains the latest contributions and other code that will appear in the next release, and the [`master`](https://github.com/HenrikBengtsson/future) branch contains the code of the latest release, which is exactly what is currently on [CRAN](https://cran.r-project.org/package=future).
+This Git repository uses the [Git Flow](https://nvie.com/posts/a-successful-git-branching-model/) branching model (the [`git flow`](https://github.com/petervanderdoes/gitflow-avh) extension is useful for this).  The [`develop`](https://github.com/futureverse/future/tree/develop) branch contains the latest contributions and other code that will appear in the next release, and the [`master`](https://github.com/futureverse/future) branch contains the code of the latest release, which is exactly what is currently on [CRAN](https://cran.r-project.org/package=future).
 
-Contributing to this package is easy.  Just send a [pull request](https://help.github.com/articles/using-pull-requests/).  When you send your PR, make sure `develop` is the destination branch on the [future repository](https://github.com/HenrikBengtsson/future).  Your PR should pass `R CMD check --as-cran`, which will also be checked by  <a href="https://github.com/HenrikBengtsson/future/actions?query=workflow%3AR-CMD-check">GitHub Actions</a> and  when the PR is submitted.
+Contributing to this package is easy.  Just send a [pull request](https://help.github.com/articles/using-pull-requests/).  When you send your PR, make sure `develop` is the destination branch on the [future repository](https://github.com/futureverse/future).  Your PR should pass `R CMD check --as-cran`, which will also be checked by  <a href="https://github.com/futureverse/future/actions?query=workflow%3AR-CMD-check">GitHub Actions</a> and  when the PR is submitted.
 
 We abide to the [Code of Conduct](https://www.contributor-covenant.org/version/2/0/code_of_conduct/) of Contributor Covenant.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -37,8 +37,8 @@ Description: The purpose of this package is to provide a lightweight and
 License: LGPL (>= 2.1)
 LazyLoad: TRUE
 ByteCompile: TRUE
-URL: https://future.futureverse.org, https://github.com/HenrikBengtsson/future
-BugReports: https://github.com/HenrikBengtsson/future/issues
+URL: https://future.futureverse.org, https://github.com/futureverse/future
+BugReports: https://github.com/futureverse/future/issues
 Encoding: UTF-8
 RoxygenNote: 7.3.2
 Roxygen: list(markdown = TRUE)
diff --git a/R/Future-class.R b/R/Future-class.R
@@ -638,7 +638,7 @@ resolved.Future <- function(x, run = TRUE, ...) {
 #' Currently it is not possible to specify what type of nested
 #' futures to be used, meaning the above default will always be
 #' used.
-#' See \href{https://github.com/HenrikBengtsson/future/issues/37}{Issue #37}
+#' See \href{https://github.com/futureverse/future/issues/37}{Issue #37}
 #' for plans on adding support for custom nested future types.
 #'
 #' (*) Ideally we would set `mc.cores = 0` but that will unfortunately

diff --git a/R/MulticoreFuture-class.R b/R/MulticoreFuture-class.R
@@ -206,7 +206,7 @@ result.MulticoreFuture <- function(future, ...) {
     ## SPECIAL: Check for fallback 'fatal error in wrapper code'
     ## try-error from parallel:::mcparallel().  If detected, then
     ## turn into an error with a more informative error message, cf.
-    ## https://github.com/HenrikBengtsson/future/issues/35
+    ## https://github.com/futureverse/future/issues/35
     if (is.null(result) || identical(result, structure("fatal error in wrapper code", class = "try-error"))) {
       label <- future$label
       if (is.null(label)) label <- "<none>"

diff --git a/R/expressions.R b/R/expressions.R
@@ -23,7 +23,7 @@ makeExpression <- local({
     ## WORKAROUND: Do not reset 'nwarnings' unless changed, because
     ## that will, as documented, trigger any warnings collected
     ## internally to be removed.
-    ## https://github.com/HenrikBengtsson/future/issues/645
+    ## https://github.com/futureverse/future/issues/645
     if (identical(getOption("nwarnings"), ...future.oldOptions$nwarnings)) {
       ...future.oldOptions$nwarnings <- NULL
     }
@@ -37,7 +37,7 @@ makeExpression <- local({
     ## on package load/attach.  For this reason, I'll relax the
     ## resetting of R options to only be done to preexisting R options
     ## for now. These thoughts were triggered by a related data.table
-    ## issue, cf. https://github.com/HenrikBengtsson/future/issues/609
+    ## issue, cf. https://github.com/futureverse/future/issues/609
     ## /HB 2022-04-29
 
     ## (b) Remove any options added

diff --git a/R/globals.R b/R/globals.R
@@ -195,7 +195,7 @@ getGlobalsAndPackages <- function(expr, envir = parent.frame(), tweak = tweakExp
       names(globals) <- names
 
       ## AD HOC: Drop duplicated 'future.call.arguments' elements, cf.
-      ## https://github.com/HenrikBengtsson/future/issues/417.
+      ## https://github.com/futureverse/future/issues/417.
       ## The reason for duplicates being possible, is that '...' is renamed
       ## to 'future.call.arguments' so the former won't override the latter.
       ## This might have to be fixed in future.apply and furrr. /HB 2020-09-21

diff --git a/R/options.R b/R/options.R
@@ -340,7 +340,7 @@ update_package_options <- function(debug = FALSE) {
   update_package_option("future.wait.alpha", mode = "numeric", debug = debug)
 
   ## Prototyping in future 1.22.0:
-  ## https://github.com/HenrikBengtsson/future/issues/515
+  ## https://github.com/futureverse/future/issues/515
   update_package_option("future.assign_globals.exclude", split = ",", debug = debug)
 
   ## Prototyping in future 1.23.0:

diff --git a/R/utils.R b/R/utils.R
@@ -134,7 +134,7 @@ inherits_from_namespace <- function(env) {
 ## Assign globals to an specific environment and set that environment
 ## for functions.  If they are functions of namespaces/packages
 ## and exclude == "namespace", then the globals are not assigned
-## Reference: https://github.com/HenrikBengtsson/future/issues/515
+## Reference: https://github.com/futureverse/future/issues/515
 assign_globals <- function(envir, globals, exclude = getOption("future.assign_globals.exclude", c("namespace")), debug = getOption("future.debug", FALSE)) {
   stop_if_not(is.environment(envir), is.list(globals))
   if (length(globals) == 0L) return(envir)
@@ -162,9 +162,9 @@ assign_globals <- function(envir, globals, exclude = getOption("future.assign_gl
         ## it's environment needs to be reassigned to the 'envir'
         ## environment.
         ## Related to:
-        ## * https://github.com/HenrikBengtsson/future/issues/475
-        ## * https://github.com/HenrikBengtsson/future/issues/515
-        ## * https://github.com/HenrikBengtsson/future/issues/608
+        ## * https://github.com/futureverse/future/issues/475
+        ## * https://github.com/futureverse/future/issues/515
+        ## * https://github.com/futureverse/future/issues/608
         if (identical(w, emptyenv())) {
           environment(global) <- envir
           if (debug) mdebugf("- reassign environment for %s", sQuote(name))
@@ -381,7 +381,7 @@ nullcon <- local({
 })
 
 
-## https://github.com/HenrikBengtsson/future/issues/130
+## https://github.com/futureverse/future/issues/130
 #' @importFrom utils packageVersion
 resolveMPI <- local({
   cache <- list()
@@ -487,7 +487,7 @@ can_capture_utf8 <- if (.Platform$OS.type == "windows") {
   function() TRUE
 }
 
-## https://github.com/HenrikBengtsson/future/issues/473
+## https://github.com/futureverse/future/issues/473
 adhoc_native_to_utf8 <- function(x) {
   code <- gsub("<U[+]([[:alnum:]]+)>", "\\\\u\\1", x)
   if (identical(code, x)) return(x)

diff --git a/README.md b/README.md
@@ -1,7 +1,7 @@
 
 
 <div id="badges"><!-- pkgdown markup -->
-<a href="https://CRAN.R-project.org/web/checks/check_results_future.html"><img border="0" src="https://www.r-pkg.org/badges/version/future" alt="CRAN check status"/></a> <a href="https://github.com/HenrikBengtsson/future/actions?query=workflow%3AR-CMD-check"><img border="0" src="https://github.com/HenrikBengtsson/future/actions/workflows/R-CMD-check.yaml/badge.svg?branch=develop" alt="R CMD check status"/></a> <a href="https://github.com/HenrikBengtsson/future/actions?query=workflow%3Arevdepcheck-top"><img border="0" src="https://github.com/HenrikBengtsson/future/actions/workflows/revdepcheck-top.yaml/badge.svg?branch=develop" alt="Top reverse-dependency checks status"/></a> <a href="https://github.com/HenrikBengtsson/future/actions?query=workflow%3Afuture_tests"><img border="0" src="https://github.com/HenrikBengtsson/future/actions/workflows/future_tests.yaml/badge.svg?branch=develop" alt="future.tests checks status"/></a>   <a href="https://app.codecov.io/gh/HenrikBengtsson/future"><img border="0" src="https://codecov.io/gh/HenrikBengtsson/future/branch/develop/graph/badge.svg" alt="Coverage Status"/></a> 
+<a href="https://CRAN.R-project.org/web/checks/check_results_future.html"><img border="0" src="https://www.r-pkg.org/badges/version/future" alt="CRAN check status"/></a> <a href="https://github.com/futureverse/future/actions?query=workflow%3AR-CMD-check"><img border="0" src="https://github.com/futureverse/future/actions/workflows/R-CMD-check.yaml/badge.svg?branch=develop" alt="R CMD check status"/></a> <a href="https://github.com/futureverse/future/actions?query=workflow%3Arevdepcheck-top"><img border="0" src="https://github.com/futureverse/future/actions/workflows/revdepcheck-top.yaml/badge.svg?branch=develop" alt="Top reverse-dependency checks status"/></a> <a href="https://github.com/futureverse/future/actions?query=workflow%3Afuture_tests"><img border="0" src="https://github.com/futureverse/future/actions/workflows/future_tests.yaml/badge.svg?branch=develop" alt="future.tests checks status"/></a>   <a href="https://app.codecov.io/gh/futureverse/future"><img border="0" src="https://codecov.io/gh/futureverse/future/branch/develop/graph/badge.svg" alt="Coverage Status"/></a> 
 </div>
 
 # future: Unified Parallel and Distributed Processing in R for Everyone <img border="0" src="man/figures/logo.png" alt="The 'future' hexlogo" align="right"/>
@@ -647,7 +647,7 @@ install.packages("future")
 
 To install the pre-release version that is available in Git branch `develop` on GitHub, use:
 ```r
-remotes::install_github("HenrikBengtsson/future", ref="develop")
+remotes::install_github("futureverse/future", ref="develop")
 ```
 This will install the package from source.  
 

diff --git a/README_ja.md b/README_ja.md
@@ -1,7 +1,7 @@
-_This is a translation of [README.md](https://github.com/HenrikBengtsson/future/blob/develop/README.md) as of [2023-06-17](https://github.com/HenrikBengtsson/future/blob/2a675abff2e3a729e6108d40710d0dcb22cc705b/README.md) done by [hoxo_m](https://github.com/hoxo-m)._
+_This is a translation of [README.md](https://github.com/futureverse/future/blob/develop/README.md) as of [2023-06-17](https://github.com/futureverse/future/blob/2a675abff2e3a729e6108d40710d0dcb22cc705b/README.md) done by [hoxo_m](https://github.com/hoxo-m)._
 
 <div id="badges"><!-- pkgdown markup -->
-<a href="https://CRAN.R-project.org/web/checks/check_results_future.html"><img border="0" src="https://www.r-pkg.org/badges/version/future" alt="CRAN check status"/></a> <a href="https://github.com/HenrikBengtsson/future/actions?query=workflow%3AR-CMD-check"><img border="0" src="https://github.com/HenrikBengtsson/future/actions/workflows/R-CMD-check.yaml/badge.svg?branch=develop" alt="R CMD check status"/></a> <a href="https://github.com/HenrikBengtsson/future/actions?query=workflow%3Arevdepcheck-top"><img border="0" src="https://github.com/HenrikBengtsson/future/actions/workflows/revdepcheck-top.yaml/badge.svg?branch=develop" alt="Top reverse-dependency checks status"/></a> <a href="https://github.com/HenrikBengtsson/future/actions?query=workflow%3Afuture_tests"><img border="0" src="https://github.com/HenrikBengtsson/future/actions/workflows/future_tests.yaml/badge.svg?branch=develop" alt="future.tests checks status"/></a>   <a href="https://app.codecov.io/gh/HenrikBengtsson/future"><img border="0" src="https://codecov.io/gh/HenrikBengtsson/future/branch/develop/graph/badge.svg" alt="Coverage Status"/></a> 
+<a href="https://CRAN.R-project.org/web/checks/check_results_future.html"><img border="0" src="https://www.r-pkg.org/badges/version/future" alt="CRAN check status"/></a> <a href="https://github.com/futureverse/future/actions?query=workflow%3AR-CMD-check"><img border="0" src="https://github.com/futureverse/future/actions/workflows/R-CMD-check.yaml/badge.svg?branch=develop" alt="R CMD check status"/></a> <a href="https://github.com/futureverse/future/actions?query=workflow%3Arevdepcheck-top"><img border="0" src="https://github.com/futureverse/future/actions/workflows/revdepcheck-top.yaml/badge.svg?branch=develop" alt="Top reverse-dependency checks status"/></a> <a href="https://github.com/futureverse/future/actions?query=workflow%3Afuture_tests"><img border="0" src="https://github.com/futureverse/future/actions/workflows/future_tests.yaml/badge.svg?branch=develop" alt="future.tests checks status"/></a>   <a href="https://app.codecov.io/gh/HenrikBengtsson/future"><img border="0" src="https://codecov.io/gh/futureverse/future/branch/develop/graph/badge.svg" alt="Coverage Status"/></a> 
 </div>
 
 # future: Rにおける統一的な並列分散処理 <img border="0" src="man/figures/logo.png" alt="The 'future' hexlogo" align="right" />
@@ -1130,7 +1130,7 @@ I am also open to contributions and collaborations of any kind.
 このパッケージの目的は、R でフューチャを使うための標準的で統一された API を提供することである。
 現状はこの目的を達成するための初期段階にすぎない。
 future パッケージを改善するアイデアや意見を持っている人がいたらぜひ教えてほしい。 開発者に連絡をとるには [GitHub
-リポジトリ](https://github.com/HenrikBengtsson/future/)経由が好ましいが、どのような手段であっても歓迎する。
+リポジトリ](https://github.com/futureverse/future/)経由が好ましいが、どのような手段であっても歓迎する。
 
 ## インストール
 

diff --git a/man/getExpression.Rd b/man/getExpression.Rd
diff --git a/tests/cluster.R b/tests/cluster.R
@@ -286,7 +286,7 @@ message("Main PID: ", pid2)
 stopifnot(pid2 == pid)
 
 message("*** cluster() - exception when re-creating workers ...")
-## https://github.com/HenrikBengtsson/future/issues/261
+## https://github.com/futureverse/future/issues/261
 
 plan(cluster, workers = "localhost")
 f <- future(1)

diff --git a/tests/globals,S4methods.R b/tests/globals,S4methods.R
@@ -26,7 +26,7 @@ for (strategy in supportedStrategies()) {
 
   ## FIXME:
   ## Just like S3 methods, S4 methods are not picked up
-  ## https://github.com/HenrikBengtsson/future/issues/615
+  ## https://github.com/futureverse/future/issues/615
   f <- future({ my_fcn(3) }, lazy = TRUE)
   rm(list = "my_fcn")
   v <- tryCatch(value(f), error = identity)