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Workflow file for this run

name: genieclust for Python
on:
push:
branches: [ master ]
pull_request:
branches: [ master ]
jobs:
build:
runs-on: ubuntu-latest
strategy:
matrix:
python-version: ['3.7', '3.8', '3.9', '3.10', '3.11', '3.12']
env:
R_LIBS_SITE: /usr/lib/R/site-library
steps:
- uses: actions/checkout@v4
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: |
sudo apt-get update
sudo apt-get -y upgrade
sudo apt-get -y install libcurl4-openssl-dev python3-rpy2 libmlpack-dev r-base-dev python3-dev pandoc
sudo mkdir -p /usr/lib/R/site-library
sudo Rscript -e "install.packages(c('genie', 'Rcpp', 'tinytest', 'roxygen2', 'pkgbuild'))"
#sudo Rscript -e "devtools::install_github('gagolews/Rd2rst')"
sudo make r
sudo python3 -m pip install --upgrade pip
if [ -f requirements.txt ]; then sudo pip3 install -r requirements.txt --upgrade; fi
sudo pip3 install wheel flake8 pytest --upgrade
sudo pip3 install sphinx numpydoc sphinx_rtd_theme sphinx-bootstrap-theme sphinxcontrib-jsmath sphinxcontrib-bibtex myst_parser --upgrade
sudo pip3 install rpy2 pweave ipython jupyter tabulate --upgrade
- name: Install optional dependencies (nmslib)
continue-on-error: true
run: |
sudo pip3 install nmslib --upgrade
- name: Install optional dependencies (mlpack)
continue-on-error: true
run: |
sudo pip3 install mlpack --upgrade
- name: Test and check Python
run: |
sudo make py-test
sudo make py-check