more #207
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name: genieclust for Python | |
on: | |
push: | |
branches: [ master ] | |
pull_request: | |
branches: [ master ] | |
jobs: | |
build: | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
python-version: ['3.7', '3.8', '3.9', '3.10', '3.11', '3.12'] | |
env: | |
R_LIBS_SITE: /usr/lib/R/site-library | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v4 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install dependencies | |
run: | | |
sudo apt-get update | |
sudo apt-get -y upgrade | |
sudo apt-get -y install libcurl4-openssl-dev python3-rpy2 libmlpack-dev r-base-dev python3-dev pandoc | |
sudo mkdir -p /usr/lib/R/site-library | |
sudo Rscript -e "install.packages(c('genie', 'Rcpp', 'tinytest', 'roxygen2', 'pkgbuild'))" | |
#sudo Rscript -e "devtools::install_github('gagolews/Rd2rst')" | |
sudo make r | |
sudo python3 -m pip install --upgrade pip | |
if [ -f requirements.txt ]; then sudo pip3 install -r requirements.txt --upgrade; fi | |
sudo pip3 install wheel flake8 pytest --upgrade | |
sudo pip3 install sphinx numpydoc sphinx_rtd_theme sphinx-bootstrap-theme sphinxcontrib-jsmath sphinxcontrib-bibtex myst_parser --upgrade | |
sudo pip3 install rpy2 pweave ipython jupyter tabulate --upgrade | |
- name: Install optional dependencies (nmslib) | |
continue-on-error: true | |
run: | | |
sudo pip3 install nmslib --upgrade | |
- name: Install optional dependencies (mlpack) | |
continue-on-error: true | |
run: | | |
sudo pip3 install mlpack --upgrade | |
- name: Test and check Python | |
run: | | |
sudo make py-test | |
sudo make py-check |