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Updating tools/scater from version 1.22.0 to 1.30.1 #4909

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Updating tools/scater from version 1.22.0 to 1.30.1 #4909

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8 changes: 4 additions & 4 deletions tools/scater/macros.xml
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Original file line number Diff line number Diff line change
@@ -1,12 +1,12 @@
<macros>
<token name="@TOOL_VERSION@">1.22.0</token>
<token name="@TOOL_VERSION@">1.30.1</token>
<token name="@PROFILE@">20.01</token>
<xml name="requirements">
<requirements>
<requirement type="package" version="@TOOL_VERSION@">bioconductor-scater</requirement>
<requirement type="package" version="1.7.1">r-optparse</requirement>
<requirement type="package" version="0.0.7">r-workflowscriptscommon</requirement>
<requirement type="package" version="1.12.0">bioconductor-loomexperiment</requirement>
<requirement type="package" version="1.7.5">r-optparse</requirement>
<requirement type="package" version="0.0.8">r-workflowscriptscommon</requirement>
<requirement type="package" version="1.20.0">bioconductor-loomexperiment</requirement>
<yield />
</requirements>
</xml>
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2 changes: 1 addition & 1 deletion tools/scater/scater-filter.xml
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Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@
<import>macros.xml</import>
</macros>
<expand macro="requirements">
<requirement type="package" version="0.93_9">r-robustbase</requirement>
<requirement type="package" version="0.99_4">r-robustbase</requirement>
</expand>
<command detect_errors="exit_code"><![CDATA[
#if $filter_type.filter_type_selector == 'manual':
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4 changes: 2 additions & 2 deletions tools/scater/scater-plot-dist-scatter.xml
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Original file line number Diff line number Diff line change
Expand Up @@ -5,8 +5,8 @@
<import>macros.xml</import>
</macros>
<expand macro="requirements">
<requirement type="package" version="0.4.0">r-ggpubr</requirement>
<requirement type="package" version="1.1.1">r-scales</requirement>
<requirement type="package" version="0.6.0">r-ggpubr</requirement>
<requirement type="package" version="1.3.0">r-scales</requirement>
</expand>
<command detect_errors="exit_code"><![CDATA[
Rscript '$__tool_directory__/scater-plot-dist-scatter.R'
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2 changes: 1 addition & 1 deletion tools/scater/scater-plot-tsne.xml
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Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@
<import>macros.xml</import>
</macros>
<expand macro="requirements">
<requirement type="package" version="0.15">r-rtsne</requirement>
<requirement type="package" version="0.17">r-rtsne</requirement>
</expand>
<command detect_errors="exit_code"><![CDATA[
Rscript '$__tool_directory__/scater-plot-tsne.R'
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