This repo supports the workshop materials for Parts I and II of this two-part series of workshops intended to introduce users to the *nix command line using various type of examples, including some from the field of genomics.
Mac users don't need to install anything.
If you are using Windows, you will need to install software on your machine that will allow access to the Bash Shell. There are a few different options, but for beginner-level users we recommend GitBash. Those who have access to Cygwin are welcome to use it instead. Whichever method you choose, the software should be installed beforehand. We will not have time to assist you with this during the workshop.
Download the .zip file for this repository, unzip it, and put it on your computer's desktop. (Click on the green "Clone or download" button above, then click on the "Download zip" link.) This file contains the data folder, slides, and other materials for the class.
Cheatsheets
- Command Line Cheat Sheet - basic commands
- Linux Command Line Cheat Sheet - basics and a few more intermediate commands
- vi Handout from NUIT Research Computing
- vi Basic Commands from Colorado State
- vi Cheat Sheet
Other resources are available from NUIT Research Computing's bash and HPC page.
The material for this class uses some content from "Introduction to the Command Line" from Data Carpentry Genomics, which is licensed under CC-BY 4.0 licenses by The Carpentries and Data Carpentry; and The Unix Shell, by The Carpentries and Software Carpentry Foundation.