Update github action to run on prs and install unxz command #57
Workflow file for this run
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name: Docker Image CI | |
on: | |
push: | |
branches: | |
- master | |
- demo-* | |
pull_request: | |
# Only use GitHub Actions for testing, because the Docker image with Mutation Assessor data is too big to be built and pushed. | |
# CircleCI builds and pushes the images to Docker Hub for every new release. | |
jobs: | |
build_and_publish_grch37: | |
if: github.repository == 'genome-nexus/genome-nexus-importer' | |
runs-on: ubuntu-latest | |
steps: | |
- name: 'Checkout git repo' | |
uses: actions/checkout@v1 | |
- name: Extract branch or tag name | |
# The GITHUB_REF variable is like "refs/head/branch_name" or | |
# "refs/tag/tag_name". If the tag is prefixed with v, this is a new | |
# version and we want to push it with the tag "latest" as well. One can give | |
# the same image multiple tags by using "," | |
run: echo "##[set-output name=image_tag_names;]$(echo ${GITHUB_REF##*/} | sed 's/^v/latest,/g')" | |
id: extract_tags | |
- name: 'Docker build with cache' | |
uses: whoan/docker-build-with-cache-action@v5 | |
with: | |
image_name: genomenexus/gn-mongo | |
image_tag: ${{ steps.extract_tags.outputs.image_tag_names }} | |
push_image_and_stages: false | |
build_and_publish_grch38: | |
if: github.repository == 'genome-nexus/genome-nexus-importer' | |
runs-on: ubuntu-latest | |
env: | |
Version: grch38_ensembl95 | |
steps: | |
- name: 'Checkout git repo' | |
uses: actions/checkout@v1 | |
- name: Extract branch or tag name | |
# The GITHUB_REF variable is like "refs/head/branch_name" | |
# The format of image tag is e.g. v0.12_grch38_ensembl95 | |
run: echo "##[set-output name=image_tag_name;]${GITHUB_REF##*/}_${Version}" | |
id: extract_tag | |
- name: 'Docker build with cache' | |
uses: whoan/docker-build-with-cache-action@v5 | |
with: | |
build_extra_args: '{"--build-arg": "ARG_REF_ENSEMBL_VERSION=grch38_ensembl95"}' | |
image_name: genomenexus/gn-mongo | |
image_tag: ${{ steps.extract_tag.outputs.image_tag_name }} | |
push_image_and_stages: false | |
build_and_publish_grcm38: | |
if: github.repository == 'genome-nexus/genome-nexus-importer' | |
runs-on: ubuntu-latest | |
env: | |
Version: grcm38_ensembl95 | |
steps: | |
- name: 'Checkout git repo' | |
uses: actions/checkout@v1 | |
- name: Extract branch or tag name | |
# The GITHUB_REF variable is like "refs/head/branch_name" | |
# The format of image tag is e.g. v0.12_grch38_ensembl95 | |
run: echo "##[set-output name=image_tag_names;]$(echo ${GITHUB_REF##*/}_${Version})" | |
id: extract_tags | |
- name: 'Docker build with cache' | |
uses: whoan/docker-build-with-cache-action@v5 | |
with: | |
build_extra_args: '--build-arg SPECIES=mus_musculus --build-arg REF_ENSEMBL_VERSION=grcm38_ensembl95' | |
image_name: genomenexus/gn-mongo | |
image_tag: ${{ steps.extract_tags.outputs.image_tag_names }} | |
push_image_and_stages: false | |