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Change unxz to xz command
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leexgh committed Aug 21, 2024
1 parent 2e0648e commit 188da7b
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion scripts/import_mongo.sh
Original file line number Diff line number Diff line change
Expand Up @@ -59,7 +59,7 @@ curl https://genome-nexus-static-data.s3.amazonaws.com/mutationassessor4_for_gen
echo "Download completed."

echo "Extracting Mutation assessor data"
unxz -k ${DIR}/../data/common_input/mutationassessor4_for_genome_nexus.tsv.xz
xz -dk ${DIR}/../data/common_input/mutationassessor4_for_genome_nexus.tsv.xz

echo "Transforming Mutation assessor data"
sed -i '' 's/uniprotId\tSV\thgvspShort\tF_score\tF_impact\tMSA\tMAV/uniprotId\tsv\thgvspShort\tf_score\tf_impact\tmsa\tmav/' ${DIR}/../data/common_input/mutationassessor4_for_genome_nexus.tsv
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