Upgrade to CoLRev 0.10.3

Command
   
   On commit 3fb60aa

Status
    init 
    retrieve         31 retrieved     [13 quality-curated]
    prescreen        31 included      
    pdfs             31 retrieved     
    screen           31 included      
    data             31 synthesized   [completed] 

Properties
    Traceability of records        YES
    Consistency (based on hooks)   YES
    Completeness of iteration      YES
    To check tree_hash use         git log --pretty=raw -1
    To validate use                colrev validate 87f77247cd08130bfc3a9ec472d317ffb17e4e54 --properties

Software
    colrev                         version 0.10.3
    Python                         version 3.8.10
    Git                            version 2.42.0
    Docker                         version 24.0.5, build 24.0.5-0ubuntu1~20.04.1

Processing report

.github/workflows/colrev_update.yml

@@ -1,5 +1,8 @@
 name: Run colrev update
 
+# Note : requires github/settings/actions/general/workflow permissions/read and write
+# Note : requires github/settings/actions/general/workflow permissions/create and approve pull requests
+
 on:
   workflow_dispatch:
   schedule:
@@ -12,8 +15,12 @@ jobs:
       - name: Checkout the repository
         uses: actions/checkout@v3
       - name: Install CoLRev
+        working-directory: ${{ runner.temp }}
         run: |
-          pip install git+https://github.com/CoLRev-Environment/colrev.git#egg=colrev
+          git clone https://github.com/CoLRev-Environment/colrev
+          cd colrev
+          python -m pip install poetry
+          poetry install
       - name: Setup git
         run: |
           git config --global user.name "CoLRev update"
@@ -22,19 +29,20 @@ jobs:
       - name: Set branch name
         run: |
           echo "BRANCH_NAME=colrev-update-$(date '+%Y-%m-%d_%H-%M-%S')" >> $GITHUB_ENV
-          echo ${{ env.BRANCH_NAME }} 
+          echo ${{ env.BRANCH_NAME }}
       - name: Switch to branch ${{ env.BRANCH_NAME }}
         run: |
           git checkout -b ${{ env.BRANCH_NAME }}
       - name: Run CoLRev update
         run: |
-          colrev search -f
-          colrev load
-          colrev prep
-          colrev prep --polish
-          colrev prescreen
-          colrev pdfs
-          colrev screen
+          poetry run --directory ${{ runner.temp }}/colrev colrev env -i
+          poetry run --directory ${{ runner.temp }}/colrev colrev search -f
+          poetry run --directory ${{ runner.temp }}/colrev colrev load
+          poetry run --directory ${{ runner.temp }}/colrev colrev prep
+          poetry run --directory ${{ runner.temp }}/colrev colrev prep --polish
+          poetry run --directory ${{ runner.temp }}/colrev colrev prescreen
+          poetry run --directory ${{ runner.temp }}/colrev colrev pdfs
+          poetry run --directory ${{ runner.temp }}/colrev colrev screen
           git push --set-upstream origin ${{ env.BRANCH_NAME }}
       - name: Create pull request
         uses: repo-sync/pull-request@v2

.gitignore

@@ -14,3 +14,4 @@ data/prep/
 data/dedupe/
 .history
 .colrev
+data/data/sample_references.bib

settings.json

@@ -19,7 +19,7 @@
         "id_pattern": "three_authors_year",
         "share_stat_req": "processed",
         "delay_automated_processing": true,
-        "colrev_version": "0.10.1",
+        "colrev_version": "0.10.3",
         "auto_upgrade": true
     },
     "sources": [