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Forcing the installation of zlib, pcfe, libcurl, and pkg-config for dockerize() #63

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chainsawriot opened this issue Feb 21, 2023 · 0 comments
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Forcing the installation of zlib, pcfe, libcurl, and pkg-config for dockerize() #63

chainsawriot opened this issue Feb 21, 2023 · 0 comments

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@chainsawriot
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zlib, pcfe, libcurl are actually sysreqs for building R. https://cran.r-project.org/doc/manuals/r-devel/R-admin.html#Essential-programs-and-libraries

But in the case of not building R (e.g. using Rocker), those sysreqs are not always installed.

And many bioc packages have tacit sysreqs to these.
@chainsawriot chainsawriot mentioned this issue Feb 21, 2023
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chainsawriot added a commit that referenced this issue Feb 21, 2023
@chainsawriot
Improve robustness of .query_sysreqs_bioc
32d93a8 
TODO: #63 and note this approach doesn't support SLE/Suse.

I think we
should also switch the Github querying in the long term to this
@chainsawriot chainsawriot mentioned this issue Feb 21, 2023
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chainsawriot added a commit that referenced this issue Feb 21, 2023
@chainsawriot
Merge pull request #66 from chainsawriot/i63
93f0a77 
Fix #63
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