Merge branch 'master' into release

.gitignore

@@ -1,7 +1,7 @@
 docs/build/
-examples/OPT/
-examples/RESULTS/
-examples/PLOTS/
+examples/opt/
+examples/results/
+examples/plots/
 *.txt
 *.pdf
 *.jld2

Manifest.toml

@@ -1,14 +1,38 @@
 # This file is machine-generated - editing it directly is not advised
 
+[[Adapt]]
+deps = ["LinearAlgebra"]
+git-tree-sha1 = "ffcfa2d345aaee0ef3d8346a073d5dd03c983ebe"
+uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e"
+version = "3.2.0"
+
 [[ArgTools]]
 uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f"
 
 [[Artifacts]]
 uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
 
+[[AxisAlgorithms]]
+deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"]
+git-tree-sha1 = "a4d07a1c313392a77042855df46c5f534076fab9"
+uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950"
+version = "1.0.0"
+
 [[Base64]]
 uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
 
+[[BenchmarkTools]]
+deps = ["JSON", "Logging", "Printf", "Statistics", "UUIDs"]
+git-tree-sha1 = "9e62e66db34540a0c919d72172cc2f642ac71260"
+uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf"
+version = "0.5.0"
+
+[[Bzip2_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
+git-tree-sha1 = "c3598e525718abcc440f69cc6d5f60dda0a1b61e"
+uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0"
+version = "1.0.6+5"
+
 [[CSV]]
 deps = ["Dates", "Mmap", "Parsers", "PooledArrays", "SentinelArrays", "Tables", "Unicode"]
 git-tree-sha1 = "1f79803452adf73e2d3fc84785adb7aaca14db36"
@@ -27,6 +51,12 @@ git-tree-sha1 = "d3d0a4e0d5bc03a6c97f4d249c8a471fc20a2f33"
 uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
 version = "0.9.28"
 
+[[CodecBzip2]]
+deps = ["Bzip2_jll", "Libdl", "TranscodingStreams"]
+git-tree-sha1 = "2e62a725210ce3c3c2e1a3080190e7ca491f18d7"
+uuid = "523fee87-0ab8-5b00-afb7-3ecf72e48cfd"
+version = "0.7.2"
+
 [[CodecZlib]]
 deps = ["TranscodingStreams", "Zlib_jll"]
 git-tree-sha1 = "ded953804d019afa9a3f98981d99b33e3db7b6da"
@@ -92,6 +122,12 @@ version = "0.24.12"
 deps = ["ArgTools", "LibCURL", "NetworkOptions"]
 uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6"
 
+[[FileIO]]
+deps = ["Pkg", "Requires", "UUIDs"]
+git-tree-sha1 = "b4fdad5fe06e0226348301b5163925ac1ae8b64b"
+uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549"
+version = "1.6.5"
+
 [[FillArrays]]
 deps = ["LinearAlgebra", "Random", "SparseArrays"]
 git-tree-sha1 = "50eabdace27aa27b143f65b65e762bb0112a7708"
@@ -108,10 +144,28 @@ version = "0.4.2"
 deps = ["Random"]
 uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820"
 
+[[HTTP]]
+deps = ["Base64", "Dates", "IniFile", "MbedTLS", "NetworkOptions", "Sockets", "URIs"]
+git-tree-sha1 = "c9f380c76d8aaa1fa7ea9cf97bddbc0d5b15adc2"
+uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3"
+version = "0.9.5"
+
+[[IniFile]]
+deps = ["Test"]
+git-tree-sha1 = "098e4d2c533924c921f9f9847274f2ad89e018b8"
+uuid = "83e8ac13-25f8-5344-8a64-a9f2b223428f"
+version = "0.5.0"
+
 [[InteractiveUtils]]
 deps = ["Markdown"]
 uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240"
 
+[[Interpolations]]
+deps = ["AxisAlgorithms", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"]
+git-tree-sha1 = "eb1dd6d5b2275faaaa18533e0fc5f9171cec25fa"
+uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59"
+version = "0.13.1"
+
 [[InvertedIndices]]
 deps = ["Test"]
 git-tree-sha1 = "15732c475062348b0165684ffe28e85ea8396afc"
@@ -140,6 +194,12 @@ git-tree-sha1 = "81690084b6198a2e1da36fcfda16eeca9f9f24e4"
 uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6"
 version = "0.21.1"
 
+[[JSONSchema]]
+deps = ["HTTP", "JSON", "ZipFile"]
+git-tree-sha1 = "b84ab8139afde82c7c65ba2b792fe12e01dd7307"
+uuid = "7d188eb4-7ad8-530c-ae41-71a32a6d4692"
+version = "0.3.3"
+
 [[LibCURL]]
 deps = ["LibCURL_jll", "MozillaCACerts_jll"]
 uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21"
@@ -176,6 +236,24 @@ version = "0.5.6"
 deps = ["Base64"]
 uuid = "d6f4376e-aef5-505a-96c1-9c027394607a"
 
+[[MathOptInterface]]
+deps = ["BenchmarkTools", "CodecBzip2", "CodecZlib", "JSON", "JSONSchema", "LinearAlgebra", "MutableArithmetics", "OrderedCollections", "SparseArrays", "Test", "Unicode"]
+git-tree-sha1 = "606efe4246da5407d7505265a1ead72467528996"
+uuid = "b8f27783-ece8-5eb3-8dc8-9495eed66fee"
+version = "0.9.20"
+
+[[MathProgBase]]
+deps = ["LinearAlgebra", "SparseArrays"]
+git-tree-sha1 = "9abbe463a1e9fc507f12a69e7f29346c2cdc472c"
+uuid = "fdba3010-5040-5b88-9595-932c9decdf73"
+version = "0.7.8"
+
+[[MbedTLS]]
+deps = ["Dates", "MbedTLS_jll", "Random", "Sockets"]
+git-tree-sha1 = "1c38e51c3d08ef2278062ebceade0e46cefc96fe"
+uuid = "739be429-bea8-5141-9913-cc70e7f3736d"
+version = "1.0.3"
+
 [[MbedTLS_jll]]
 deps = ["Artifacts", "Libdl"]
 uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1"
@@ -192,9 +270,33 @@ uuid = "a63ad114-7e13-5084-954f-fe012c677804"
 [[MozillaCACerts_jll]]
 uuid = "14a3606d-f60d-562e-9121-12d972cd8159"
 
+[[MutableArithmetics]]
+deps = ["LinearAlgebra", "SparseArrays", "Test"]
+git-tree-sha1 = "6b6bb8f550dc38310afd4a0af0786dc3222459e2"
+uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0"
+version = "0.2.14"
+
+[[NLopt]]
+deps = ["MathOptInterface", "MathProgBase", "NLopt_jll"]
+git-tree-sha1 = "e7b4c6b8e10b8d1238112a21f5cc001138989dc7"
+uuid = "76087f3c-5699-56af-9a33-bf431cd00edd"
+version = "0.6.2"
+
+[[NLopt_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
+git-tree-sha1 = "2b597c46900f5f811bec31f0dcc88b45744a2a09"
+uuid = "079eb43e-fd8e-5478-9966-2cf3e3edb778"
+version = "2.7.0+0"
+
 [[NetworkOptions]]
 uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908"
 
+[[OffsetArrays]]
+deps = ["Adapt"]
+git-tree-sha1 = "b3dfef5f2be7d7eb0e782ba9146a5271ee426e90"
+uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881"
+version = "1.6.2"
+
 [[OpenSpecFun_jll]]
 deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"]
 git-tree-sha1 = "9db77584158d0ab52307f8c04f8e7c08ca76b5b3"
@@ -238,6 +340,14 @@ version = "0.11.0"
 deps = ["Unicode"]
 uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7"
 
+[[Psychometrics]]
+deps = ["Dates", "Distributed", "Distributions", "Interpolations", "LinearAlgebra", "NLopt", "Random", "Requires", "SharedArrays", "SpecialFunctions"]
+git-tree-sha1 = "ff73ba2020bfbe3815fea97f4e6b560cefd13e3b"
+repo-rev = "master"
+repo-url = "https://github.com/giadasp/Psychometrics.jl"
+uuid = "ce8202d9-98c3-4990-890a-8616ce2c06f9"
+version = "0.4.4"
+
 [[QuadGK]]
 deps = ["DataStructures", "LinearAlgebra"]
 git-tree-sha1 = "12fbe86da16df6679be7521dfb39fbc861e1dc7b"
@@ -252,6 +362,11 @@ uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb"
 deps = ["Serialization"]
 uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
 
+[[Ratios]]
+git-tree-sha1 = "37d210f612d70f3f7d57d488cb3b6eff56ad4e41"
+uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439"
+version = "0.4.0"
+
 [[Reexport]]
 git-tree-sha1 = "57d8440b0c7d98fc4f889e478e80f268d534c9d5"
 uuid = "189a3867-3050-52da-a836-e630ba90ab69"
@@ -270,10 +385,10 @@ uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa"
 version = "0.6.1"
 
 [[Rmath_jll]]
-deps = ["Libdl", "Pkg"]
-git-tree-sha1 = "d76185aa1f421306dec73c057aa384bad74188f0"
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
+git-tree-sha1 = "1b7bf41258f6c5c9c31df8c1ba34c1fc88674957"
 uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f"
-version = "0.2.2+1"
+version = "0.2.2+2"
 
 [[SHA]]
 uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce"
@@ -310,6 +425,12 @@ git-tree-sha1 = "75394dbe2bd346beeed750fb02baa6445487b862"
 uuid = "276daf66-3868-5448-9aa4-cd146d93841b"
 version = "1.2.1"
 
+[[StaticArrays]]
+deps = ["LinearAlgebra", "Random", "Statistics"]
+git-tree-sha1 = "9da72ed50e94dbff92036da395275ed114e04d49"
+uuid = "90137ffa-7385-5640-81b9-e52037218182"
+version = "1.0.1"
+
 [[Statistics]]
 deps = ["LinearAlgebra", "SparseArrays"]
 uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
@@ -366,13 +487,30 @@ git-tree-sha1 = "7c53c35547de1c5b9d46a4797cf6d8253807108c"
 uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa"
 version = "0.9.5"
 
+[[URIs]]
+git-tree-sha1 = "7855809b88d7b16e9b029afd17880930626f54a2"
+uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4"
+version = "1.2.0"
+
 [[UUIDs]]
 deps = ["Random", "SHA"]
 uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4"
 
 [[Unicode]]
 uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5"
 
+[[WoodburyMatrices]]
+deps = ["LinearAlgebra", "SparseArrays"]
+git-tree-sha1 = "59e2ad8fd1591ea019a5259bd012d7aee15f995c"
+uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6"
+version = "0.5.3"
+
+[[ZipFile]]
+deps = ["Libdl", "Printf", "Zlib_jll"]
+git-tree-sha1 = "c3a5637e27e914a7a445b8d0ad063d701931e9f7"
+uuid = "a5390f91-8eb1-5f08-bee0-b1d1ffed6cea"
+version = "0.9.3"
+
 [[Zlib_jll]]
 deps = ["Libdl"]
 uuid = "83775a58-1f1d-513f-b197-d71354ab007a"

Project.toml

@@ -1,17 +1,19 @@
 name = "ATA"
 uuid = "a8b2d192-9814-11e9-3a67-ff0161457e0c"
 authors = ["GiadaSpaccapanico <giadasp@users.noreply.github.com>"]
-version = "0.11.0"
+version = "0.12.0"
 
 [deps]
 CSV = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b"
 DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
 DelimitedFiles = "8bb1440f-4735-579b-a4ab-409b98df4dab"
 Distributed = "8ba89e20-285c-5b6f-9357-94700520ee1b"
 Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f"
+FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549"
 JLD2 = "033835bb-8acc-5ee8-8aae-3f567f8a3819"
 LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 Printf = "de0858da-6303-5e67-8744-51eddeeeb8d7"
+Psychometrics = "ce8202d9-98c3-4990-890a-8616ce2c06f9"
 Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
 Requires = "ae029012-a4dd-5104-9daa-d747884805df"
 StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"

docs/make.jl

@@ -9,7 +9,7 @@ makedocs(
     format = Documenter.HTML(),
     modules = [ATA],
     doctest = true,
-    pages = ["index.md", "utils.md", "build.md", "opt.md", "print.md", "examples.md"],
+    pages = ["index.md", "build.md", "opt.md", "compact.md", "print_and_plot.md", "structs.md", "utils.md", "examples.md"],
 )
 
 deploydocs(repo = "github.com/giadasp/ATA.jl.git", devurl = "docs", devbranch = "release")

docs/src/build.md

@@ -2,5 +2,5 @@
 
 ```@autodocs
 Modules = [ATA]
-Pages   = ["build.jl"]
+Pages   = ["build/build.jl"]
 ```

docs/src/compact.md

@@ -0,0 +1,6 @@
+# Compact ATA
+
+```@autodocs
+Modules = [ATA]
+Pages   = ["compact_ata.jl"]
+```