Bump the pip-version group with 5 updates

[dependabot]

Bumps the pip-version group with 5 updates:

Package	From	To
coverage	7.4.4	7.5.0
pytest	8.1.1	8.2.0
pytest-xdist	3.5.0	3.6.1
h5py	3.10.0	3.11.0
pandas	2.2.1	2.2.2

Updates coverage from 7.4.4 to 7.5.0

Changelog

Sourced from coverage's changelog.

Version 7.5.0 — 2024-04-23

• Added initial support for function and class reporting in the HTML report. There are now three index pages which link to each other: files, functions, and classes. Other reports don't yet have this information, but it will be added in the future where it makes sense. Feedback gladly accepted! Finishes issue 780_.

• Other HTML report improvements:

  • There is now a "hide covered" checkbox to filter out 100% files, finishing issue 1384_.

  • The index page is always sorted by one of its columns, with clearer indications of the sorting.

  • The "previous file" shortcut key didn't work on the index page, but now it does, fixing issue 1765_.

• The debug output showing which configuration files were tried now shows absolute paths to help diagnose problems where settings aren't taking effect, and is renamed from "attempted_config_files" to the more logical "config_files_attempted."

• Python 3.13.0a6 is supported.

.. _issue 780: nedbat/coveragepy#780 .. _issue 1384: nedbat/coveragepy#1384 .. _issue 1765: nedbat/coveragepy#1765

.. _changes_7-4-4:

Commits

• 5f4e034 docs: sample HTML for 7.5.0
• ed97cfb docs: prep for 7.5.0
• 41e01d3 build: use macos 13 for 3.8 and 3.9 while GitHub rolls out macos 14
• 583f0c0 test: add a test for skipping covered functions
• b115ed3 refactor: keep Analysis private
• 40a052e docs: document CodeRegion and its plugin methods
• 2ff9933 docs: remove comment that now explains nothing.
• a6ba1c8 fix: html report pages fully validate
• 74c87a8 fix: previous page shortcut works in index page. #1765
• e016967 feat: main index page links to other index pages
• Additional commits viewable in compare view

Updates pytest from 8.1.1 to 8.2.0

Release notes

Sourced from pytest's releases.

8.2.0

pytest 8.2.0 (2024-04-27)

Deprecations

• #12069: A deprecation warning is now raised when implementations of one of the following hooks request a deprecated py.path.local parameter instead of the pathlib.Path parameter which replaced it:

  • pytest_ignore_collect{.interpreted-text role="hook"} - the path parameter - use collection_path instead.
  • pytest_collect_file{.interpreted-text role="hook"} - the path parameter - use file_path instead.
  • pytest_pycollect_makemodule{.interpreted-text role="hook"} - the path parameter - use module_path instead.
  • pytest_report_header{.interpreted-text role="hook"} - the startdir parameter - use start_path instead.
  • pytest_report_collectionfinish{.interpreted-text role="hook"} - the startdir parameter - use start_path instead.

  The replacement parameters are available since pytest 7.0.0. The old parameters will be removed in pytest 9.0.0.

  See legacy-path-hooks-deprecated{.interpreted-text role="ref"} for more details.

Features

• #11871: Added support for reading command line arguments from a file using the prefix character @, like e.g.: pytest @tests.txt. The file must have one argument per line.

  See Read arguments from file <args-from-file>{.interpreted-text role="ref"} for details.

Improvements

• #11523: pytest.importorskip{.interpreted-text role="func"} will now issue a warning if the module could be found, but raised ImportError{.interpreted-text role="class"} instead of ModuleNotFoundError{.interpreted-text role="class"}.

  The warning can be suppressed by passing exc_type=ImportError to pytest.importorskip{.interpreted-text role="func"}.

  See import-or-skip-import-error{.interpreted-text role="ref"} for details.

• #11728: For unittest-based tests, exceptions during class cleanup (as raised by functions registered with TestCase.addClassCleanup <unittest.TestCase.addClassCleanup>{.interpreted-text role="meth"}) are now reported instead of silently failing.

• #11777: Text is no longer truncated in the short test summary info section when -vv is given.

• #12112: Improved namespace packages detection when consider_namespace_packages{.interpreted-text role="confval"} is enabled, covering more situations (like editable installs).

• #9502: Added PYTEST_VERSION{.interpreted-text role="envvar"} environment variable which is defined at the start of the pytest session and undefined afterwards. It contains the value of pytest.__version__, and among other things can be used to easily check if code is running from within a pytest run.

Bug Fixes

• #12065: Fixed a regression in pytest 8.0.0 where test classes containing setup_method and tests using @staticmethod or @classmethod would crash with AttributeError: 'NoneType' object has no attribute 'setup_method'.

  Now the request.instance <pytest.FixtureRequest.instance>{.interpreted-text role="attr"} attribute of tests using @staticmethod and @classmethod is no longer None, but a fresh instance of the class, like in non-static methods.

... (truncated)

Commits

• 6bd3f31 Tweak changelog for 8.2.0
• 9b6219b Prepare release version 8.2.0
• 835765c Merge pull request #12130 from bluetech/fixtures-inline
• 7e7503c unittest: report class cleanup exceptions (#12250)
• 882c4da fixtures: inline fail_fixturefunc
• 2e8fb9f fixtures: extract a _check_fixturedef method
• acf2971 fixtures: inline _getnextfixturedef into _get_active_fixturedef
• 3c77aec fixtures: move "request" check early
• d217d68 fixtures: inline _compute_fixture_value
• 530be28 fixtures: use early return in _get_active_fixturedef
• Additional commits viewable in compare view

Updates pytest-xdist from 3.5.0 to 3.6.1

Changelog

Sourced from pytest-xdist's changelog.

pytest-xdist 3.6.1 (2024-04-28)

Bug Fixes

• [#1071](https://github.com/pytest-dev/pytest-xdist/issues/1071) <https://github.com/pytest-dev/pytest-xdist/issues/1071>_: Add backward compatibility for deadlock issue with the execnet new main_thread_only "execmodel" triggered when pytest-cov accesses rinfo.

pytest-xdist 3.6.0 (2024-04-19)

This release was YANKED due to a regression fixed in 3.6.1.

Features

• [#1027](https://github.com/pytest-dev/pytest-xdist/issues/1027) <https://github.com/pytest-dev/pytest-xdist/pull/1027>_:pytest-xdist workers now always execute the tests in the main thread. Previously some tests might end up executing in a separate thread other than main in the workers, due to some internal execnet`` details. This can cause problems specially with async frameworks where the event loop is running in the ``main`` thread (for example #620 pytest-dev/pytest-xdist#620`__).

Bug Fixes

• [#1024](https://github.com/pytest-dev/pytest-xdist/issues/1024) <https://github.com/pytest-dev/pytest-xdist/issues/1024>_: Added proper handling of shouldstop (such as set by --max-fail) and shouldfail conditions in workers. Previously, a worker might have continued executing further tests before the controller could terminate the session.

• [#1028](https://github.com/pytest-dev/pytest-xdist/issues/1028) <https://github.com/pytest-dev/pytest-xdist/issues/1028>_: Fixed compatibility issue between looponfail and editable installs.

• [#620](https://github.com/pytest-dev/pytest-xdist/issues/620) <https://github.com/pytest-dev/pytest-xdist/issues/620>_: Use the new main_thread_only execnet "execmodel" so that code which expects to only run in the main thread will now work as expected.

• [#937](https://github.com/pytest-dev/pytest-xdist/issues/937) <https://github.com/pytest-dev/pytest-xdist/issues/937>_: Fixed a bug where plugin would raise an incompatibility error with --pdb despite using -n0.

Removals

• [#1053](https://github.com/pytest-dev/pytest-xdist/issues/1053) <https://github.com/pytest-dev/pytest-xdist/issues/1053>_: Dropped support for Python 3.7.

• [#1057](https://github.com/pytest-dev/pytest-xdist/issues/1057) <https://github.com/pytest-dev/pytest-xdist/issues/1057>_: pytest>=7.0.0 is now required.

  execnet>=2.1.0 is now required.

Trivial Changes

• [#1020](https://github.com/pytest-dev/pytest-xdist/issues/1020) <https://github.com/pytest-dev/pytest-xdist/issues/1020>_: pytest-xdist's setup.py file is removed.

  If you relied on this file, e.g. to install pytest using setup.py install, please see Why you shouldn't invoke setup.py directly <https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html#summary>_ for alternatives.

... (truncated)

Commits

• 4dd2978 Release 3.6.1
• b397288 Merge pull request #1072 from zmedico/gateway-cache-rinfo
• 12b3cce Cache execnet gateway rinfo during WorkerController setup
• c93a106 build(deps): bump hynek/build-and-inspect-python-package (#1066)
• 52e2022 [pre-commit.ci] pre-commit autoupdate (#1073)
• 699f939 Merge pull request #1070 from pytest-dev/release-3.6.0
• 80bc0b8 Release 3.6.0
• 20e3ac7 Use execnet main_thread_only execmodel (#1027)
• 0a4238f Merge pull request #1067 from pytest-dev/pre-commit-ci-update-config
• 0686279 [pre-commit.ci] pre-commit autoupdate
• Additional commits viewable in compare view

Updates h5py from 3.10.0 to 3.11.0

Commits

• 2c80981 Merge pull request #2405 from takluyver/rever-3.11
• 76afe10 Add HDF5 1.14.4 fixes to release notes
• 0090479 Merge pull request #2406 from ajelenak/libhdf5-1.14.4
• 0f071a4 Merge pull request #2407 from h5py/dependabot/github_actions/actions-45223d3826
• 944a4a6 Bump peaceiris/actions-gh-pages from 3 to 4 in the actions group
• 8f513ce Clean up release notes
• 62bd813 Rename new whatsnew file, add to index
• 9c305e2 Updated CHANGELOG for 3.11.0
• 9e107c4 bumped version to 3.11.0
• 71af64d Merge pull request #2360 from loichuder/visit-links
• Additional commits viewable in compare view

Updates pandas from 2.2.1 to 2.2.2

Release notes

Sourced from pandas's releases.

Pandas 2.2.2

We are pleased to announce the release of pandas 2.2.2. This release includes some new features, bug fixes, and performance improvements. We recommend that all users upgrade to this version.

See the full whatsnew for a list of all the changes. Pandas 2.2.2 supports Python 3.9 and higher.

The release will be available on the defaults and conda-forge channels:

conda install pandas

Or via PyPI:

python3 -m pip install --upgrade pandas

Please report any issues with the release on the pandas issue tracker.

Thanks to all the contributors who made this release possible.

Commits

• d9cdd2e RLS: 2.2.2
• 98aeac9 Backport PR #58209: CI: Pin blosc to fix pytables (#58211)
• 5466f15 Backport PR #58202: DOC/TST: Document numpy 2.0 support and add tests… (#58208)
• 45b0b32 Backport PR #58203 on branch 2.2.x (DOC: Add release date/contributors for 2....
• c7ec566 Backport PR #58087 on branch 2.2.x (BLD: Build wheels using numpy 2.0rc1) (#5...
• 691fc88 Backport PR #58181 on branch 2.2.x (CI: correct error msg in test_view_index)...
• a947587 Backport PR #58138 on branch 2.2.x (BLD: Fix nightlies not building) (#58140)
• b56842d Backport PR #58100 on branch 2.2.x (MNT: fix compatibility with beautifulsoup...
• 0f83d50 Revert "BLD: Pin numpy on 2.2.x" (#58093)
• e9b81ee Backport PR #58126: BLD: Build wheels with numpy 2.0rc1 (#58127)
• Additional commits viewable in compare view

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[bdice]

It looks like macos-latest has changed to an ARM-based runner. This breaks our oldest macOS test configuration with NumPy 1.19.0 and our newest macOS test configuration with tables.

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 86.09%. Comparing base (7ade007) to head (f2c1a2f).

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #995      +/-   ##
==========================================
+ Coverage   86.01%   86.09%   +0.08%     
==========================================
  Files          20       20              
  Lines        3503     3503              
  Branches      770      770              
==========================================
+ Hits         3013     3016       +3     
+ Misses        333      330       -3     
  Partials      157      157              

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