Profile cbds with different blocks input, small #2
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| name: Profile cbds with different blocks input, small | |
| on: | |
| # Trigger the workflow on # push or pull request | |
| # push: | |
| # Trigger the workflow manually | |
| # schedule: | |
| # - cron: '0 0 */3 * *' | |
| workflow_dispatch: | |
| jobs: | |
| test: | |
| name: Profile BDS with different blocks input, small | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| matlab: [latest] | |
| dim: [small] | |
| with_optim_toolbox: [yes] | |
| solver: [cbds] | |
| competitor_1: [ds] | |
| competitor_2: [cbds-half] | |
| competitor_3: [cbds-quarter] | |
| run_plain: [false] | |
| summarize_log_ratio_profiles: [false] | |
| feature: [plain, noisy_1e-1, noisy_1e-2, noisy_1e-3, noisy_1e-4, linearly_transformed, rotation_noisy_1e-1, rotation_noisy_1e-2, rotation_noisy_1e-3, rotation_noisy_1e-4] | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - name: Checkout OptiProfiler | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: optiprofiler/optiprofiler | |
| ref: matlab | |
| path: optiprofiler | |
| - name: Install Texlive | |
| run: sudo apt-get update && sudo apt-get install texlive | |
| - name: Check whether LaTeX is installed | |
| run: pdflatex --version | |
| - name: Cache MATLAB | |
| id: cache-matlab | |
| uses: actions/cache@v4.0.1 | |
| with: | |
| path: ${{ runner.tool_cache }}/MATLAB | |
| key: ${{ matrix.os }}-${{ matrix.matlab }}-${{ matrix.with_optim_toolbox }} | |
| - name: Set up MATLAB with optimization toolbox | |
| if: ${{ matrix.with_optim_toolbox == 'yes' }} | |
| uses: matlab-actions/setup-matlab@v2.1.2 | |
| with: | |
| release: ${{ matrix.matlab }} | |
| products: Optimization_Toolbox | |
| - name: Run test | |
| uses: matlab-actions/run-command@v2.1.1 | |
| with: | |
| command: | | |
| root_dir = pwd() | |
| ls | |
| % Setup optiprofiler | |
| cd(fullfile(root_dir, 'optiprofiler')); | |
| setup | |
| cd(root_dir); | |
| % Setup bds | |
| setup | |
| cd(fullfile(root_dir, 'tests', 'competitors')); | |
| addpath(pwd); | |
| % profile | |
| cd(fullfile(root_dir, 'tests')); | |
| options = struct(); | |
| options.feature_name = '${{ matrix.feature }}'; | |
| options.solver_names = {'${{ matrix.solver }}', '${{ matrix.competitor_1 }}', '${{ matrix.competitor_2 }}', '${{ matrix.competitor_3 }}'}; | |
| options.dim = '${{ matrix.dim }}'; | |
| options.run_plain = ${{ matrix.run_plain }}; | |
| options.summarize_log_ratio_profiles = ${{ matrix.summarize_log_ratio_profiles }}; | |
| profile_optiprofiler(options); | |
| cd(root_dir); | |
| cd(fullfile(root_dir, 'tests', 'out')); | |
| ls -R | |
| cd(root_dir); | |
| - name: Change the summary file name | |
| run: | | |
| cd ./tests/out | |
| ls -R | |
| find . -type f -name 'summary.pdf' | while read -r file; do | |
| # Obtain the parent directory and name | |
| parent_dir=$(dirname "$file") | |
| parent_name=$(basename "$parent_dir") | |
| # Obtain the new name(Why the fifth underline? Because the last five parts are the time stamp) | |
| new_name=$(echo "$parent_name" | awk -F'_' '{if(NF>=5) {for(i=1;i<=NF-5;i++) printf "%s%s", $i, (i<NF-5?"_":"")} else print $0}') | |
| # Print the new name | |
| echo "New name: $new_name" | |
| # Obtain the directory name | |
| dir_name=$(dirname "$file") | |
| # Establish the new file name | |
| new_file="$dir_name/summary_$new_name.pdf" | |
| # Check if the source and destination are the same | |
| if [ "$file" != "$new_file" ]; then | |
| mv "$file" "$new_file" | |
| echo "Renamed $file to $new_file" | |
| else | |
| echo "Source and destination are the same, skipping: $file" | |
| fi | |
| done | |
| - name: Upload artifact | |
| uses: actions/upload-artifact@v3.1.2 | |
| with: | |
| name: profile_optiprofiler_${{ matrix.solver }}_${{ matrix.competitor_1 }}_${{ matrix.competitor_2 }}_${{ matrix.competitor_3 }}_${{ matrix.dim }}_${{ matrix.feature }} | |
| path: ./tests/out/** | |
| merge_artifacts: | |
| name: Merge Artifacts | |
| runs-on: ubuntu-latest | |
| needs: test | |
| permissions: | |
| actions: read | |
| contents: read | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - name: Install PDF tools | |
| run: sudo apt-get update && sudo apt-get install -y poppler-utils | |
| - name: Download artifacts | |
| uses: actions/download-artifact@v3 | |
| with: | |
| path: tests/testdata/downloaded_artifacts | |
| - name: List all files | |
| run: | | |
| cd tests/testdata/downloaded_artifacts | |
| ls -R | |
| - name: Merge PDF files | |
| run: | | |
| cp tests/tools/merge_pdf.sh tests/testdata/downloaded_artifacts | |
| cd tests/testdata/downloaded_artifacts/ | |
| ARTIFACT_NAME=$(ls | grep "profile_optiprofiler" | head -n 1) | |
| BASE_INFO=$(echo $ARTIFACT_NAME | sed -n 's/.*optiprofiler_\([^_]*_[^_]*_\(small\|big\)\).*/\1/p') | |
| echo "Base info extracted: ${BASE_INFO}" | |
| echo "BASE_INFO=${BASE_INFO}" >> $GITHUB_ENV | |
| # Merge PDF files | |
| mkdir summary | |
| for f in $(find . -maxdepth 3 -type f -name 'summary*.pdf'); do | |
| if [ ! -f "summary/$(basename $f)" ]; then | |
| cp "$f" summary/ | |
| fi | |
| done | |
| cd summary | |
| ls | |
| bash ../merge_pdf.sh | |
| mv merged.pdf "summary_${BASE_INFO}.pdf" | |
| cd .. | |
| if [ -d "summary" ]; then | |
| mv summary "summary_${BASE_INFO}" | |
| fi | |
| - name: Upload merged artifact | |
| uses: actions/upload-artifact@v3 | |
| env: | |
| BASE_INFO: ${{ env.BASE_INFO }} | |
| with: | |
| name: merged_profiles_${{ env.BASE_INFO }} | |
| path: tests/testdata/downloaded_artifacts/** | |
| - name: Upload summary files | |
| uses: actions/upload-artifact@v3 | |
| env: | |
| BASE_INFO: ${{ env.BASE_INFO }} | |
| with: | |
| name: summary_files_${{ env.BASE_INFO }} | |
| path: tests/testdata/downloaded_artifacts/summary_${{ env.BASE_INFO }}/** |