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1. xinhe-lab/GSFA xinhe-lab/GSFA Public

   R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening data.

   C++ 17 1

2. xinhe-lab/GSFA_paper xinhe-lab/GSFA_paper Public

   Analysis code for the GSFA manuscript "A novel Bayesian factor analysis method improves detection of genes and biological processes affected by perturbations in single-cell CRISPR screening"

   R 2 2

3. BVS_cre-gene BVS_cre-gene Public

   A Bayesian variable selection method that models the relationship between the activity of cis-regulatory elements and target gene expression

   R 1

4. ATACseq_pipeline ATACseq_pipeline Public

   A Snakemake pipeline for processing ATAC-seq reads from various samples into a peak count matrix

   Python 4

5. endeneon/ASoC_functional_disease_variants endeneon/ASoC_functional_disease_variants Public

   Allele-specific open chromatin in human iPSC neurons elucidates functional noncoding disease variants

   Jupyter Notebook 1

6. CROP-seq CROP-seq Public

   Differential expression analysis on single-cell CROP-seq data (neural progenitor cells)

   HTML 1