update r-universe installation instructions #16
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| # NOTE: This workflow is overkill for most R packages | |
| # check-standard.yaml is likely a better choice | |
| # usethis::use_github_action("check-standard") will install it. | |
| # | |
| # For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag. | |
| # https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - master | |
| pull_request: | |
| branches: | |
| - main | |
| - master | |
| name: R-CMD-check | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.head_ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: macOS-latest, r: 'release'} | |
| - {os: windows-latest, r: 'release'} | |
| - {os: windows-latest, r: 'oldrel'} | |
| - {os: ubuntu-18.04, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest", http-user-agent: "R/4.0.0 (ubuntu-18.04) R (4.0.0 x86_64-pc-linux-gnu x86_64 linux-gnu) on GitHub Actions" } | |
| - {os: ubuntu-18.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"} | |
| - {os: ubuntu-18.04, r: 'oldrel-1', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"} | |
| - {os: ubuntu-18.04, r: 'oldrel-2', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"} | |
| env: | |
| RSPM: ${{ matrix.config.rspm }} | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| RETICULATE_AUTOCONFIGURE: 'FALSE' | |
| TF_VERSION: '1.14.0' | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| id: install-r | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| cache-version: 2 | |
| extra-packages: | | |
| local::. | |
| any::keras | |
| any::rcmdcheck | |
| - name: Install Miniconda | |
| run: | | |
| reticulate::install_miniconda() | |
| shell: Rscript {0} | |
| - name: Set options for conda binary for macOS | |
| if: runner.os == 'macOS' | |
| run: | | |
| echo "options(reticulate.conda_binary = reticulate:::miniconda_conda())" >> .Rprofile | |
| - name: Install TensorFlow | |
| run: | | |
| cat("::group::Create Environment", sep = "\n") | |
| reticulate::conda_create('r-reticulate', packages = c('python==3.7')) | |
| cat("::endgroup::", sep = "\n") | |
| cat("::group::Install Tensorflow", sep = "\n") | |
| keras::install_keras(tensorflow = Sys.getenv('TF_VERSION'), | |
| extra_packages = c('IPython', 'requests', 'certifi', 'urllib3', 'tensorflow-probability==0.7.0', 'numpy==1.16.4')) | |
| cat("::endgroup::", sep = "\n") | |
| shell: Rscript {0} | |
| - name: Python + TF details | |
| run: | | |
| tensorflow::tf_config() | |
| tensorflow::tf_version() | |
| reticulate::py_module_available("tensorflow_probability") | |
| reticulate::py_config() | |
| shell: Rscript {0} | |
| - name: Session info | |
| run: | | |
| options(width = 100) | |
| pkgs <- installed.packages()[, "Package"] | |
| sessioninfo::session_info(pkgs, include_base = TRUE) | |
| shell: Rscript {0} | |
| - uses: r-lib/actions/check-r-package@v2 | |
| with: | |
| args: 'c("--no-manual", "--as-cran", "--no-multiarch")' | |