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OpenSWATH Pipelines:The OpenSWATH Workflow enables targeted data analysis of data-independent acquisition (DIA) or SWATH-MS proteomic data. The main workflow consists of OpenSWATH, PyProphet, TRIC, IPF and TAPIR. This website provides documentation on installation and application of the tools. Guomics Lab build it in piplines and make it easy fo…

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OpenSWATH-Pipeline Menual

Date : 20190520

Author : Hao Chen, Chao Xu, Tiansheng Zhu, @Guomics

Web: https://www.guomics.com

UPDATE: 20190531

Help document:

example:

If you want to view the help document, enter the following command:

python run.py -h

If you want to transform Raw/Wiff data, enter the following command:

python run.py -p /your/data

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OpenSWATH Pipelines:The OpenSWATH Workflow enables targeted data analysis of data-independent acquisition (DIA) or SWATH-MS proteomic data. The main workflow consists of OpenSWATH, PyProphet, TRIC, IPF and TAPIR. This website provides documentation on installation and application of the tools. Guomics Lab build it in piplines and make it easy fo…

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