GEOexplorer is an R/Bioconductor package and web application that enables users to perform gene expression analysis.
The development of GEOexplorer was made possible because of the excellent code provided by GEO2R (https://www.ncbi.nlm.nih.gov/geo/geo2r/).
GEOexplorer is also available as a website on the following link: https://geoexplorer.rosalind.kcl.ac.uk/
Use the devtools install_github function for installation e.g.
if (!requireNamespace("devtools", quietly = TRUE))
install.packages("devtools")
devtools::install_github("guypwhunt/GEOexplorer")Or install from BioConductor
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GEOexplorer")library(GEOexplorer)
loadApp()Pull requests are welcome.
For any changes or issues, please open an issue to discuss what you would like to change.
Guy Hunt with contributions from Fabrizio Smeraldi, Michael Barnes and Rafael Henkin.
Please see our Google doc for the planned feature updates.