Scripts

In-house scripts for data processing and analyses at GxE Lab.

Name		Name	Last commit message	Last commit date
Latest commit History 107 Commits
workflows		workflows
.gitignore		.gitignore
DaivdGO.R		DaivdGO.R
LICENSE		LICENSE
README.md		README.md
bam_filter.py		bam_filter.py
bam_mlen_hist.py		bam_mlen_hist.py
bam_split.py		bam_split.py
bed12_slop.py		bed12_slop.py
bigwig_covpn.py		bigwig_covpn.py
bigwig_covpn_dna.py		bigwig_covpn_dna.py
bigwig_normalize.py		bigwig_normalize.py
codon_usage_bias_funs_v2.R		codon_usage_bias_funs_v2.R
ens_homolog_pan.py		ens_homolog_pan.py
ens_homolog_vertebrates.py		ens_homolog_vertebrates.py
extract_txinfo_ensembl.R		extract_txinfo_ensembl.R
ezplot.R		ezplot.R
fa2maf.py		fa2maf.py
fasta_shuffle.py		fasta_shuffle.py
fasta_split.py		fasta_split.py
fold2csv.pl		fold2csv.pl
gtf.py		gtf.py
maf_getfasta.py		maf_getfasta.py
maf_index.py		maf_index.py
maf_splitfa.py		maf_splitfa.py
mirna-target-scan.pl		mirna-target-scan.pl
orf_bls.py		orf_bls.py
orf_floss.py		orf_floss.py
orf_floss_cutoff.R		orf_floss_cutoff.R
orf_kozak.py		orf_kozak.py
orf_maf.py		orf_maf.py
orf_mergetab.py		orf_mergetab.py
orf_quant.py		orf_quant.py
orf_type.py		orf_type.py
parseBowtie2Log.py		parseBowtie2Log.py
parseCutadaptLog.py		parseCutadaptLog.py
parseRNALfold.py		parseRNALfold.py
parseRNAfold.py		parseRNAfold.py
parseStarLog.py		parseStarLog.py
psite_ribocode_config.py		psite_ribocode_config.py
sam2tsv.py		sam2tsv.py
scutils.R		scutils.R
sra_xml.R		sra_xml.R
vcf_tidy.py		vcf_tidy.py

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