Added analysis folder and protein_analysis.py #1733
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| name: Tests | |
| on: [ push, pull_request ] | |
| jobs: | |
| tests: | |
| name: Tests | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ ubuntu-latest ] | |
| python-version: [ "3.8", "3.10" ] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Set PyTest options | |
| if: github.event_name == 'pull_request' | |
| run: | |
| echo "PYTEST_ADDOPTS=-m 'not nonpublic'" >> $GITHUB_ENV | |
| - name: Check PyTest options | |
| run: | |
| echo $PYTEST_ADDOPTS | |
| - name: Install dependencies | |
| run: | | |
| pip install "tox<4.0.0" | |
| BIOONTOLOGY_VERSION=1.30 | |
| echo "bio ontology version: ${BIOONTOLOGY_VERSION}" | |
| mkdir -p $HOME/.indra/bio_ontology/$BIOONTOLOGY_VERSION | |
| wget -nv https://bigmech.s3.amazonaws.com/travis/bio_ontology/$BIOONTOLOGY_VERSION/mock_ontology.pkl -O $HOME/.indra/bio_ontology/$BIOONTOLOGY_VERSION/bio_ontology.pkl | |
| - name: Test with pytest | |
| run: | |
| tox -e py | |
| env: | |
| INDRA_NEO4J_URL: ${{ secrets.INDRA_NEO4J_URL }} | |
| INDRA_NEO4J_USER: ${{ secrets.INDRA_NEO4J_USER }} | |
| INDRA_NEO4J_PASSWORD: ${{ secrets.INDRA_NEO4J_PASSWORD }} |