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Hartwig Medical Foundation

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  1. hmftools hmftools Public

    Various algorithms for analysing genomics data

    Java 199 60

  2. testdata testdata Public

    Small datasets for testing purpose (FASTQ, BAM)

    20 4

  3. scripts scripts Public

    Shell 20 14

  4. pipeline5 pipeline5 Public

    Java 19 3

  5. pipeline-perl pipeline-perl Public archive

    Pipeline of tools to process raw fastq data and produce meaningful genomic data

    Perl 14 4

  6. platinum platinum Public

    Run multiple Pipeline5 instances at once

    Java 10 1

Repositories

Showing 10 of 29 repositories
  • pipeline5 Public
    hartwigmedical/pipeline5’s past year of commit activity
    Java 19 GPL-3.0 3 0 3 Updated Dec 25, 2024
  • hmftools Public

    Various algorithms for analysing genomics data

    hartwigmedical/hmftools’s past year of commit activity
    Java 199 GPL-3.0 60 7 5 Updated Dec 24, 2024
  • scripts Public
    hartwigmedical/scripts’s past year of commit activity
    Shell 20 GPL-3.0 14 2 8 Updated Dec 23, 2024
  • serve Public

    SERVE and dependencies

    hartwigmedical/serve’s past year of commit activity
    Java 0 GPL-3.0 0 0 1 Updated Dec 19, 2024
  • platinum Public

    Run multiple Pipeline5 instances at once

    hartwigmedical/platinum’s past year of commit activity
    Java 10 GPL-3.0 1 2 0 Updated Dec 18, 2024
  • cram2fastq Public

    Convert CRAM files stored in GCP to FASTQ

    hartwigmedical/cram2fastq’s past year of commit activity
    Shell 1 0 0 0 Updated Oct 11, 2024
  • bamcomp Public

    Tools for comparing BAMs and CRAMs

    hartwigmedical/bamcomp’s past year of commit activity
    Java 1 0 0 2 Updated Oct 3, 2024
  • actin-interview Public

    ACTIN development interview case

    hartwigmedical/actin-interview’s past year of commit activity
    Kotlin 0 0 0 0 Updated Jul 4, 2024
  • snpcheck Public

    A post-pipeline validation which compares the results of the unifiedgenotyper against a control VCF as a final QC

    hartwigmedical/snpcheck’s past year of commit activity
    Java 0 0 0 0 Updated May 8, 2024
  • peach Public

    Describe PEACH

    hartwigmedical/peach’s past year of commit activity
    Python 1 0 0 0 Updated Jan 5, 2024
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