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SCT v2 #92

Merged
merged 20 commits into from
Feb 9, 2023
Merged

SCT v2 #92

merged 20 commits into from
Feb 9, 2023

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mistrm82
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Changing the code to SCT to include "v2" results in small differences downstream, and the celltype to cluster mapping changes slightly. As such many things have been updated here including:

  • all images after SCT (since it is a new UMAP)
  • code mostly in marker identification
  • content and flow in marker identification to match the new clusters

Also, I have created a new download with a new seurat integrated file and I have updated the "workshop_data" folder with all new RData files and scripts to match v2. This should be complete - but could use a review!

@rkhetani rkhetani merged commit 75f1d4d into master Feb 9, 2023
@rkhetani rkhetani deleted the SCT-v2 branch February 9, 2023 18:58
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2 participants