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[jvm-packages] fix errors in example (dmlc#3719)
* add back train method but mark as deprecated * fix scalastyle error * add back train method but mark as deprecated * add back train method but mark as deprecated * add back train method but mark as deprecated * fix scalastyle error * fix scalastyle error * fix scalastyle error * instrumentation * use log console * better measurement * fix erros in example * update histmaker
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