Code

deploy dev to prod#101

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Merged

simonjmendelsohn merged 162 commits intomainhcholab/sfkit-website:mainfrom devhcholab/sfkit-website:devCopy head branch name to clipboardFeb 15, 2024

+2,221-6,963

Commits

Commits on Sep 20, 2023

• first commit for backend-only flask api

  simonjmendelsohn

  committed
  a811797

Commits on Sep 21, 2023

• Switch to Quart, use async/await

  simonjmendelsohn

  committed
  f85f920

Commits on Sep 26, 2023

• add signaling server

  simonjmendelsohn

  committed
  1aa48d7

Commits on Sep 29, 2023

• uuid for study_id

  simonjmendelsohn

  committed
  87dfd06

Commits on Oct 17, 2023

• minor updates

  simonjmendelsohn

  committed
  cee22f3

• try updating cloudbuild and other files to fix dev deployment

  simonjmendelsohn

  committed
  81cfe06

Commits on Oct 18, 2023

• add missing awaits

  simonjmendelsohn

  committed
  adf2f59

Commits on Oct 19, 2023

• set url for usage in dev in sfkit cli

  simonjmendelsohn

  committed
  b2bf2ab

• Split runtime and dev dependencies

  dinvlad

  committed
  a023162

• Add Dockerfile with a dummy test

  dinvlad

  committed
  2799e7f

• Add GitHub workflow to build the image with Dockerfile

  dinvlad

  committed
  4c0ea72

• Fix Docker tag/label handling in GitHub workflow

  dinvlad

  committed
  aafec38

• Fix pr event tag

  dinvlad

  committed
  ef42163

• Set GitHub workflow trigger paths

  dinvlad

  committed
  7a31bb3

• Fix Docker repo name using GitHub repo name

  dinvlad

  committed
  ee2bf3f

• Add missing *.py and hypercorn to Docker image

  dinvlad

  committed
  e57fb59

Commits on Oct 20, 2023

• remove multiprocessing where it is not longer usable

  simonjmendelsohn

  committed
  638e615

Commits on Oct 23, 2023

• Add image name+tag according to Terra guidelines

  dinvlad

  committed
  5a6c184

Commits on Oct 24, 2023

• first pass at image build

  

  mflinn-broad

  committed
  cb5ef6e

• fix image repo name

  

  mflinn-broad

  committed
  1c9c1f3

• fix PR comment step

  

  mflinn-broad

  committed
  e8cf80b

• forgot a dollar sign

  

  mflinn-broad

  committed
  c723b4d

• how about this?

  

  mflinn-broad

  committed
  b879801

Commits on Oct 25, 2023

• empty commit to trigger ci

  

  mflinn-broad

  committed
  a0935cc

Commits on Oct 26, 2023

• updates for unusual branching strategies

  

  mflinn-broad

  committed
  f20dbfa

• Fix signaling server for testing

  simonjmendelsohn

  committed
  d833a8c

• [DDO-3243] Remove Github workflow file from PR trigger paths

  dinvlad

  committed
  d0d0847

• Partially revert #d0d0847f

  dinvlad

  committed
  7ce35ae

• Merge pull request #4 from hcholab/mf-terra-gha-build

  Show description for 610f266
  dinvlad

  authored
  610f266

• Freeze dependencies

  dinvlad

  committed
  65022b8

• don't wait on cp0 for proxy, as cp0 may not use proxy

  simonjmendelsohn

  committed
  63930d0

• update startup-script to use sfkit-proxy

  simonjmendelsohn

  committed
  c3ee7f6

• small fixes to startup script

  simonjmendelsohn

  committed
  a6c77dd

Commits on Oct 30, 2023

• add more error logging for signaling server

  simonjmendelsohn

  committed
  933b387

• take 2 at fixing signalling messages

  simonjmendelsohn

  committed
  9ec4a75

• take 3 at fixing signalling messages

  simonjmendelsohn

  committed
  22640ec

• take 4

  simonjmendelsohn

  committed
  d249a26

• take 5

  simonjmendelsohn

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  b26d8c9

• take 6

  simonjmendelsohn

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  1094429

• take 7

  simonjmendelsohn

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  5ad2c91

• take 8

  simonjmendelsohn

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  0ea2b56

• take 9

  simonjmendelsohn

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  b5b5860

• take 10

  simonjmendelsohn

  committed
  49a37de

• take 11

  simonjmendelsohn

  committed
  7588403

Commits on Nov 2, 2023

• update signalling server according to fixes in sfkit-proxy

  simonjmendelsohn

  committed
  4c614e6

Commits on Nov 6, 2023

• Improve GCP auth in the Terra GH workflow

  dinvlad

  committed
  8405081

• [github] Add Cron trigger for Terra workflow

  dinvlad

  committed
  adb8a2e

• [github] Auto-cancel previous build_push_terra workflow runs

  dinvlad

  committed
  7a4d579

Commits on Nov 9, 2023

• add formatting check for study_id for extra protection against path-injection, as per CodeQL

  simonjmendelsohn

  committed
  341969f

Commits on Nov 16, 2023

• use simplified startup-script with docker for cp0

  simonjmendelsohn

  committed
  f806c4f

• add some configurations to startup-script

  simonjmendelsohn

  committed
  ae7e37e

Commits on Nov 20, 2023

• minor improvement to startup script

  simonjmendelsohn

  committed
  5776d7e

• work on startup script

  simonjmendelsohn

  committed
  c5de681

Commits on Nov 27, 2023

• try sudo to debug startup script

  simonjmendelsohn

  committed
  9404309

• automatically stop cp0 when user-configured study finishes

  simonjmendelsohn

  committed
  517d31b

Commits on Nov 29, 2023

• Set APP_VERSION at Terra image build time

  dinvlad

  committed
  4b20923

• Rename APP_VERSION to BUILD_VERSION

  dinvlad

  committed
  be8b0b8

• Add APP_VERSION to Docker build

  dinvlad

  committed
  9f5a237

Commits on Nov 30, 2023

• Merge pull request #5 from hcholab/docker-app-version

  Show description for c01179e
  dinvlad

  authored
  c01179e

• update to allow proper version reporting and auto deploy to terra dev environment on merge

  

  mflinn-broad

  committed
  6d400fc

• only try to deploy commits to dev branch to dev

  

  mflinn-broad

  committed
  456648c

• Set default Websocket port to 8080

  dinvlad

  committed
  996a609

• Merge pull request #9 from hcholab/websocket-port

  Show description for 3114bd7
  dinvlad

  authored
  3114bd7

• Rename WebSocket Origin var

  dinvlad

  committed
  e6f1ab4

• Merge pull request #10 from hcholab/websocket-origin

  Show description for 52ac047
  dinvlad

  authored
  52ac047

• Return firebaseProjectId from /createCustomToken

  dinvlad

  committed
  da750d5

• Merge pull request #11 from hcholab/firebase-project-var

  Show description for af7efec
  dinvlad

  authored
  af7efec

• Merge branch 'dev' into mf-update-for-auto-deploy-to-terra-dev

  dinvlad

  committed
  312d1a7

• Merge pull request #8 from hcholab/mf-update-for-auto-deploy-to-terra-dev

  Show description for 939f768
  dinvlad

  authored
  939f768

• Turn on FLASK_DEBUG only in Cloud Run development by default

  dinvlad

  committed
  fb9eecf

• Merge pull request #12 from hcholab/flask-debug-optional

  Show description for 2c9b6b3
  dinvlad

  authored
  2c9b6b3

• Restore Broadbot token

  dinvlad

  committed
  8b83ac0

• add status and version endpoints

  simonjmendelsohn

  committed
  b66f300

• separate appVersion and buildVersion

  simonjmendelsohn

  committed
  e236016

• Merge pull request #14 from hcholab/status-endpoints

  Show description for 4d95949
  simonjmendelsohn

  authored
  4d95949

• Merge pull request #13 from hcholab/restore-broadbot-token

  Show description for 830ba15
  dinvlad

  authored
  830ba15

• Parse allowed CORS origin from SFKIT_API_URL (#15)

  Show description for 17e7ac8
  dinvlad

  authored
  17e7ac8

Commits on Dec 1, 2023

• [sfkit] Fix Failure upon autodeploy to terra dev environments (#16)

  Show description for e9ca95c
  

  Michael Flinn

  authored
  e9ca95c

• no server header for hypercorn (#17)

  simonjmendelsohn

  authored
  1bb538e

Commits on Dec 4, 2023

• Fix Hypercorn config copy and add Curl to Dockerfile (#18)

  Show description for 9deed59
  dinvlad

  authored
  9deed59

Commits on Dec 5, 2023

• Add localhost dev origin (#19)

  dinvlad

  authored
  f7e3b57

• Add localhost dev origin (attempt 2) (#20)

  Show description for b454691
  dinvlad

  authored
  b454691

Commits on Dec 6, 2023

• Add localhost dev origin (attempt 3) (#21)

  Show description for 0beb7ec
  dinvlad

  authored
  0beb7ec

• Add localhost dev origin (attempt 4) (#22)

  Show description for b27b2a8
  dinvlad

  authored
  b27b2a8

• Fix cloudbuild commas (#23)

  Show description for fceab8a
  dinvlad

  authored
  fceab8a

• Fix CORS origin list conversion (#24)

  dinvlad

  authored
  b865f1e

Commits on Dec 20, 2023

• modify auth to allow terra login (#25)

  simonjmendelsohn

  authored
  18f54da

Commits on Jan 2, 2024

• Use FIREBASE_PROJECT_ID for Firestore database (#26)

  Show description for 87c27ef
  dinvlad

  authored
  87c27ef

Commits on Jan 3, 2024

• await auth; check firestore on creation (#27)

  simonjmendelsohn

  authored
  123c389

• Set Firebase App project ID (#28)

  dinvlad

  authored
  2575a41

• Fix FIREBASE_PROJECT_ID constant import (#29)

  dinvlad

  authored
  2b6c375

• Use custom FIRESTORE_DATABASE name (#30)

  dinvlad

  authored
  4902ae6

• Bump cryptography from 41.0.5 to 41.0.6 (#31)

  Show description for 9d6acd7
  dependabot[bot]

  authored
  9d6acd7

• Set Firebase app for custom Firebase token creation (#32)

  dinvlad

  authored
  1ab8169

• Detect service account email for Firebase App (#33)

  Show description for cb283a5
  dinvlad

  authored
  cb283a5

Commits on Jan 4, 2024

• Use optional TARGET_SERVICE_ACCOUNT impersonation (#34)

  Show description for 713aff2
  dinvlad

  authored
  713aff2

• Fix Google Auth import (#35)

  Show description for acb2b7a
  dinvlad

  authored
  acb2b7a

• Attempt to fix Google impersonated_credentials import (#36)

  dinvlad

  authored
  0c987c6

• Set serviceAccountId for TARGET_SERVICE_ACCOUNT (#37)

  dinvlad

  authored
  cc2761b

Commits on Jan 5, 2024

• Always reference FIREBASE_PROJECT_ID when setting up Firebase and Firestore (#38)

  dinvlad

  authored
  d4069b7

• Log impersonated Firebase token without signature (#39)

  Show description for dd0b66d
  dinvlad

  authored
  dd0b66d

Commits on Jan 8, 2024

• Disable TARGET_SERVICE_ACCOUNT for now (#40)

  dinvlad

  authored
  2633336

• Re-enable impersonation (#41)

  Show description for bc79218
  dinvlad

  authored
  bc79218

• Remove and cleanup impersonation (#42)

  Show description for 5b4e187
  dinvlad

  authored
  5b4e187

• Revert to using FIREBASE_PROJECT_ID (#43)

  dinvlad

  authored
  405318f

• Revert Firebase project ID assignment (#44)

  dinvlad

  authored
  8614d7f

• Unrevert project ID setting and return database name from /createCustomToken (#45)

  Show description for d6759c6
  dinvlad

  authored
  d6759c6

• Fix Firestore database name returned from /createCustomToken (#46)

  Show description for b9dfb1e
  dinvlad

  authored
  b9dfb1e

Commits on Jan 9, 2024

• Parse user ID universally and improve Auth header validation (#47)

  Show description for e14639f
  dinvlad

  authored
  e14639f

• Add support for CLI auth with Terra (#48)

  Show description for e674154
  dinvlad

  authored
  e674154

• Fix default Firestore database ID (#49)

  Show description for 87b695e
  dinvlad

  authored
  87b695e

• Set log level via LOG_LEVEL env var and add auth user debug logging (#50)

  dinvlad

  authored
  61f0da5

• Add more logging (#51)

  dinvlad

  authored
  ded5513

• Externalize all env vars into constants.py (#52)

  Show description for be0fd3a
  dinvlad

  authored
  be0fd3a

• Fix log format and level for Terra/Kubernetes (#53)

  dinvlad

  authored
  7cd7104

• Step up DEBUG logging level to avoid too much verbosity (#54)

  Show description for 72a632d
  dinvlad

  authored
  72a632d

• Improve debug logging (#55)

  dinvlad

  authored
  e779d79

Commits on Jan 11, 2024

• Add separate database for non-terra dev (#56)

  simonjmendelsohn

  authored
  2741cdf

• Get CLI username from user ID and study_id from query param for Terra (#57)

  Show description for 80fe59f
  dinvlad

  authored
  80fe59f

Commits on Jan 12, 2024

• Launch terra cp0 (#60)

  Show description for bf9a80c
  dinvlad

  authored
  bf9a80c

• Fix auth header handling and generate SA token properly (#61)

  Show description for 4b6cf79
  dinvlad

  authored
  4b6cf79

• Fix HeaderTypes -> Headers (#62)

  dinvlad

  authored
  1379486

• remove jinja dependency; simplify email invitation logic (#59)

  Show description for 9f19e93
  simonjmendelsohn

  authored
  9f19e93

• Fix register_service_account() invocation (#63)

  dinvlad

  authored
  65939e1

• Fix Terra Service Account registration (#64)

  Show description for ba273e0
  dinvlad

  authored
  ba273e0

• Fix get_service_account_headers() implementation (#65)

  dinvlad

  authored
  e3a5db1

• Add error description to register_terra_service_account() (#66)

  Show description for 1c162cb
  dinvlad

  authored
  1c162cb

• Temp log SA on error (#67)

  dinvlad

  authored
  8490454

• Fix Sam registration body (#68)

  Show description for de70a39
  dinvlad

  authored
  de70a39

Commits on Jan 14, 2024

• minor bug fixes and security improvements; fix accepting invitation to study (#69)

  simonjmendelsohn

  authored
  3c5e93b

Commits on Jan 16, 2024

• Fix Terra request headers assignment (#70)

  dinvlad

  authored
  bd9ffca

• Improve API exception reporting (#71)

  dinvlad

  authored
  2a3ec3d

• Refactor API exception handling through HTTPException (#72)

  Show description for 3c9809c
  dinvlad

  authored
  3c9809c

• Revert to using dedicated APIException class (#73)

  Show description for 55b578f
  dinvlad

  authored
  55b578f

• Fix parameters and error handling for Terra workflow submission (#74)

  Show description for 7d02ebb
  dinvlad

  authored
  7d02ebb

• Fix response type conversion in APIException (#75)

  dinvlad

  authored
  f5a7b51

• Fix APIException semantics (#76)

  dinvlad

  authored
  12bd577

• prevent repeat study titles; minor formatting (#77)

  simonjmendelsohn

  authored
  e84020a

Commits on Jan 18, 2024

• add endpoint to get_study_options for terra cli (#78)

  simonjmendelsohn

  authored
  5730d29

• fix bug in previous commit (#79)

  simonjmendelsohn

  authored
  275f7cc

Commits on Jan 19, 2024

• fix wrong parameter in function (#80)

  simonjmendelsohn

  authored
  dc2cf2e

• Make auth key automatically (#81)

  Show description for 1a48d34
  simonjmendelsohn

  authored
  1a48d34

• Auto-detect CP0 id on Terra (#82)

  Show description for ef1f088
  dinvlad

  authored
  ef1f088

• Fix ID key imports (#83)

  dinvlad

  authored
  7551d4b

• Fix user_id detection in /get_study_options (#84)

  Show description for a9820eb
  dinvlad

  authored
  a9820eb

• lots of reformatting and some small bug fixes (#85)

  simonjmendelsohn

  authored
  1341e60

Commits on Jan 20, 2024

• try to fix transactions (#86)

  simonjmendelsohn

  authored
  d70a482

• try to fix transactions again (#87)

  simonjmendelsohn

  authored
  566c945

• fix awaiting for file (#88)

  simonjmendelsohn

  authored
  0cca5b9

Commits on Jan 24, 2024

• Improve signaling logging (#89)

  Show description for 27a1173
  dinvlad

  authored
  27a1173

• fix task initialization for users (#90)

  simonjmendelsohn

  authored
  f3ad154

• set HOME env variable; handle SENDGRID_API_KEY env variable (#91)

  simonjmendelsohn

  authored
  846f5ec

• improve cloud run logging (#92)

  Show description for d65619a
  simonjmendelsohn

  authored
  d65619a

• source profile to fix startup scripts (#93)

  simonjmendelsohn

  authored
  1e79e22

Commits on Jan 25, 2024

• add logging for errors in signaling server (#94)

  simonjmendelsohn

  authored
  fa4160b

• Fix SFKIT_API_URL for Cloud Run and remove extra logging (#95)

  Show description for c3c8302
  

  simonjmendelsohn

  and

  dinvlad

  authored
  c3c8302

Commits on Feb 1, 2024

• Fix WebSocket connection issues due to CORS (#96)

  Show description for a2cd5bd
  dinvlad

  authored
  a2cd5bd

• Log allowed origins (#97)

  Show description for 1877112
  dinvlad

  authored
  1877112

Commits on Feb 5, 2024

• allow anonymous users to create studies (on non-terra) (#98)

  simonjmendelsohn

  authored
  d5f4dc3

Commits on Feb 7, 2024

• Bump cryptography from 41.0.6 to 42.0.0 (#99)

  Show description for 8bfe987
  dependabot[bot]

  authored
  8bfe987

Commits on Feb 14, 2024

• add sf-relate; minor bug fixes (#100)

  simonjmendelsohn

  authored
  f695586

Commits on Feb 15, 2024

• don't hardcode SFKIT_API_URL as much; minor formatting (#102)

  simonjmendelsohn

  authored
  9a0ee9a