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#649 4 tests added for import/export
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canbax committed Apr 9, 2021
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4 changes: 3 additions & 1 deletion cypress.json
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376 changes: 376 additions & 0 deletions cypress/downloads/neuronal_muscle_signaling.sbgn

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1,123 changes: 1,123 additions & 0 deletions cypress/fixtures/activated_stat1alpha_induction_of_the_irf1_gene.sbml

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3,574 changes: 3,574 additions & 0 deletions cypress/fixtures/causative.format

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27 changes: 27 additions & 0 deletions cypress/fixtures/causative.sif
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MAPK3 phosphorylates STAT3 http://pathwaycommons.org/pc2/Catalysis_4adf7ae0eb7bbdd3668757dcc1d5ab37;;http://pathwaycommons.org/pc2/BiochemicalReaction_25cdd13c89b111c7f7a2eb00c07441c7;http://pathwaycommons.org/pc2/BiochemicalReaction_4b899db29fcf4ef6b7518c36962b3945;http://pathwaycommons.org/pc2/BiochemicalReaction_0c7d5414148d6d242a61586911ec29c7;http://pathwaycommons.org/pc2/Catalysis_0550389d05d1135952a7c154c4375fbc;http://pathwaycommons.org/pc2/BiochemicalReaction_5fac44e413bae3fd2cb1a70ed98343c1;http://pathwaycommons.org/pc2/BiochemicalReaction_29fbfd128ba7c42107e8e5df6a8581ae;http://pathwaycommons.org/pc2/BiochemicalReaction_711fc6f4207df1d9f95d2c4e168c5ff5;http://pathwaycommons.org/pc2/Catalysis_0efc20911c11fe20e633fc2b26c10af8;http://pathwaycommons.org/pc2/Catalysis_bef6c39acbec095635e0a8b3d1205d02;http://pathwaycommons.org/pc2/Catalysis_fff2797339dce3a86fd8df096c9289cc;http://pathwaycommons.org/pc2/Catalysis_a05f0c2ed73217f92820dd0858f30aa1 Y705;S726;S727
PTK2 phosphorylates PXN http://pathwaycommons.org/pc2/BiochemicalReaction_9737fd171be653512851135e52682476;http://identifiers.org/reactome/R-HSA-5218809;http://pathwaycommons.org/pc2/Catalysis_87bffd66d88bad78fba07008ecdac7a1;http://pathwaycommons.org/pc2/Catalysis_44e1563e743e136ebc14f2355b2ebf6b;http://pathwaycommons.org/pc2/BiochemicalReaction_ef661e40912af015fb7f43c2ccb66bc0;http://pathwaycommons.org/pc2/Catalysis_de66a1f774ee9841824dd51c5cb70c00;http://pathwaycommons.org/pc2/Catalysis_f51d9a9c194029e7a343febcef23285d;http://pathwaycommons.org/pc2/Catalysis_d77f7611518f95bc8f469b6c28e312b5;http://pathwaycommons.org/pc2/BiochemicalReaction_d1efd9354350327e3ea319bff6bd7a64;http://pathwaycommons.org/pc2/BiochemicalReaction_3f2b6d44c90b22c7c1b27453d060f660;http://pathwaycommons.org/pc2/Catalysis_3af74dd01157dce5f3beb67b0effeb1a Y118;Y31;Y181
FYN phosphorylates PLCG1 http://identifiers.org/reactome/R-HSA-2424487;http://pathwaycommons.org/pc2/Catalysis_e9c442030bda5cc295e679aa76276200 Y783;Y771;Y1253;Y472
FYN phosphorylates STAT3 http://identifiers.org/reactome/R-HSA-1470009;http://pathwaycommons.org/pc2/Catalysis_d62e9b0649680e622d87dae995a26a67;http://pathwaycommons.org/pc2/BiochemicalReaction_4b899db29fcf4ef6b7518c36962b3945;http://pathwaycommons.org/pc2/BiochemicalReaction_5763f59f5f6930019f293df57b819285;http://pathwaycommons.org/pc2/BiochemicalReaction_0c7d5414148d6d242a61586911ec29c7;http://pathwaycommons.org/pc2/Catalysis_aec764c03445d1a927c6a379db7c8663;http://pathwaycommons.org/pc2/BiochemicalReaction_83b8c7a7aa54b39d9133c4e5ddcbe673;http://pathwaycommons.org/pc2/Catalysis_fff2797339dce3a86fd8df096c9289cc;http://pathwaycommons.org/pc2/Catalysis_195c75bcba7d0263d546807dc19d61b9;http://pathwaycommons.org/pc2/Catalysis_a05f0c2ed73217f92820dd0858f30aa1 Y727;Y705
PTK2 phosphorylates BCAR1 http://pathwaycommons.org/pc2/Catalysis_12d243db8624db2fad27e1d588e8e78f;http://pathwaycommons.org/pc2/Catalysis_4c38dace87f50e4979b7db2127456a1a;http://pathwaycommons.org/pc2/BiochemicalReaction_24be77f41ab469daf0eb11d6c3a9bf6e;http://identifiers.org/reactome/R-HSA-5218828;http://pathwaycommons.org/pc2/BiochemicalReaction_543b5927b21c650319a2199e6a15ea72;http://pathwaycommons.org/pc2/Catalysis_3e25bb3779ceb58757f1bf683495cac7;http://pathwaycommons.org/pc2/BiochemicalReaction_3eb46f111f1b53526ff4907bb59d1fae;http://pathwaycommons.org/pc2/Catalysis_d0efd83121a203be354eea14416ceb5f Y387;Y287;Y664;Y410;Y267;Y234;Y666;Y327;Y249;Y306;Y372;Y362
PLCG1 phosphorylates STAT5A http://pathwaycommons.org/pc2/ComplexAssembly_357014b67330d9eb0a11a4f082821e5a;http://pathwaycommons.org/pc2/Catalysis_25128446019f072127e2f9614c48e871 Y694
GRB2 dephosphorylates STAT3 http://pathwaycommons.org/pc2/Control_44292cfe1c74e0278efd4bb4c99f069e;http://pathwaycommons.org/pc2/BiochemicalReaction_3e6354a293ff21474093b2b4a277f6f5 Y705
EGFR phosphorylates GAB1 http://pathwaycommons.org/pc2/BiochemicalReaction_b97249a5ef1e5846962ecdd68638eaaf;http://pathwaycommons.org/pc2/Catalysis_04eecf5f25d9eada5230309f7659f817;http://identifiers.org/reactome/R-HSA-177930;http://pathwaycommons.org/pc2/BiochemicalReaction_c270e58b2338c1af6b3fd274802f1bc9;http://pathwaycommons.org/pc2/Catalysis_9b122b945c15b1f5f0fcd6f8c7a552de;http://pathwaycommons.org/pc2/BiochemicalReaction_744bd73977c3a8792ccb8dcf52a756a2;Y659;http://pathwaycommons.org/pc2/Catalysis_3049e2d81fd588d45fc3a70a17bc8142;http://pathwaycommons.org/pc2/BiochemicalReaction_7fe6fd6c286c7ca0e303c8f67507e3e1;http://pathwaycommons.org/pc2/BiochemicalReaction_ba86ee79cbaabbb882a306bf78f6bcc8;http://pathwaycommons.org/pc2/Catalysis_984bfa8d4f405270dffa7fb89784dfde;http://pathwaycommons.org/pc2/BiochemicalReaction_3c36415cf90fc51f1a7e2a8d977665cc;http://pathwaycommons.org/pc2/BiochemicalReaction_aa2778dd79651cb6ac4354d15f61a216;http://pathwaycommons.org/pc2/Catalysis_b2bffd090bdf5e6378a2cd69b0c02ea6;http://pathwaycommons.org/pc2/Catalysis_7fbcfedbcf29f6680cafb60d16b01185;http://pathwaycommons.org/pc2/BiochemicalReaction_6e38868310c3ec02185f340fa220933c;http://pathwaycommons.org/pc2/Catalysis_b87abd295604daa0c9c4061890b88fee;http://pathwaycommons.org/pc2/Catalysis_749b4a907979a2679ecdd36e783ab8f5;http://pathwaycommons.org/pc2/Catalysis_7282d9b44d6fab0df25a5ab084bce84d;http://pathwaycommons.org/pc2/Catalysis_5f058c6fab68e8c4bf30695cb1638257;http://pathwaycommons.org/pc2/BiochemicalReaction_5f2b7016e7ede6670eaf5a25497d711c;Y373 Y589;Y657;Y447;Y689;Y659;Y406;Y307;Y627;Y619;Y285;Y373;Y472
EGF dephosphorylates MAPK9 http://pathwaycommons.org/pc2/BiochemicalReaction_403a056157e15f3d66595259e625e1ff;http://pathwaycommons.org/pc2/Control_7e864b49304e0aad819030f52cf57a32;http://pathwaycommons.org/pc2/BiochemicalReaction_118273465cefae99be9057fad0869f93;http://pathwaycommons.org/pc2/BiochemicalReaction_beaccaa04276fddcbc66c657e189fb4b;http://pathwaycommons.org/pc2/SmallMolecule_b6f7b3023e67664094526666ad9b1ed0;http://pathwaycommons.org/pc2/Catalysis_f06f98b5a514217c82915833d879d664;http://pathwaycommons.org/pc2/Control_c76c312263f113bba34dbfd085fdd622 Y185;T183
EGF phosphorylates PLCG1 http://pathwaycommons.org/pc2/Catalysis_d14443239cda880fa5514c0a705456b5;http://identifiers.org/reactome/R-HSA-1251922;http://pathwaycommons.org/pc2/Catalysis_6914e8424ae79161aa22e49cfbbb99e6;http://identifiers.org/reactome/R-HSA-212710;http://identifiers.org/reactome/R-HSA-1247844;http://pathwaycommons.org/pc2/Catalysis_d315c0abea01d306914340ffaab330ad Y783;Y771;Y1253;Y472
EGF phosphorylates STAT3 http://pathwaycommons.org/pc2/BiochemicalReaction_3e6354a293ff21474093b2b4a277f6f5;http://pathwaycommons.org/pc2/Catalysis_b7ec7e6c08d6603fde18ab81b0898d2b Y705
FYN phosphorylates MAPK14 http://pathwaycommons.org/pc2/BiochemicalReaction_f04d8151e56607d4ff7cb38e03c441f4;http://identifiers.org/reactome/R-HSA-451366;http://pathwaycommons.org/pc2/Catalysis_dd52a46733ba58c86c54efeeb18b0b5b;http://pathwaycommons.org/pc2/Catalysis_4dfc33e1dc5070c70672fbbc0f43ebb2 Y323;T180;Y182
FYN phosphorylates SHC1 http://pathwaycommons.org/pc2/Catalysis_e5728f60c25c5b11cd0e90093b5ecc2b;http://pathwaycommons.org/pc2/BiochemicalReaction_aaee3550f13962f3d63ca8c2cae479fa;http://pathwaycommons.org/pc2/BiochemicalReaction_8100b7cd13f870e15712c4df281b7fe5;http://pathwaycommons.org/pc2/Catalysis_992fc18a0401298554a05cb7e63f1530 Y349;Y318;Y427;Y350
TNK2 phosphorylates BCAR1 http://pathwaycommons.org/pc2/Catalysis_d5358d6168d15926f3142c57649d744a;http://pathwaycommons.org/pc2/BiochemicalReaction_6c7514f104ffdec63f3f4a3e0d41ac6f Y410;Y249;Y165
EGFR phosphorylates PLCG1 http://pathwaycommons.org/pc2/BiochemicalReaction_6a513aa740e1f84ba4c56272d0b11469;;http://identifiers.org/reactome/R-HSA-1251922;http://identifiers.org/reactome/R-HSA-5637795;http://identifiers.org/reactome/R-HSA-212710;http://pathwaycommons.org/pc2/Catalysis_904fc5c1657d3e1f30d4574a10be91d3;http://identifiers.org/reactome/R-HSA-1247844;http://pathwaycommons.org/pc2/Catalysis_edfcb5034545499e6a9fdb6de6b04980;http://pathwaycommons.org/pc2/BiochemicalReaction_216755701b896e85c85548a4907358c6;http://pathwaycommons.org/pc2/Catalysis_d14443239cda880fa5514c0a705456b5;http://pathwaycommons.org/pc2/Catalysis_c250447b083a4541ffa2bfa73aa4ee50;http://pathwaycommons.org/pc2/Catalysis_6914e8424ae79161aa22e49cfbbb99e6;http://pathwaycommons.org/pc2/BiochemicalReaction_b896bb0904a767f8bda87d01ccfb50b1;http://pathwaycommons.org/pc2/Catalysis_f3313ecc51bab0dfc78e65d3a232c4f2;http://pathwaycommons.org/pc2/Catalysis_d315c0abea01d306914340ffaab330ad Y783;Y771;Y1253;Y472
PTK2 phosphorylates WASL http://pathwaycommons.org/pc2/Catalysis_32f73f0c9d20987bb182dd72fd50b8b9;http://pathwaycommons.org/pc2/BiochemicalReaction_5c05f6fc9f2e274ab59abb47758eeaaf;http://identifiers.org/reactome/R-HSA-2197698;http://pathwaycommons.org/pc2/Catalysis_bbe677e2ba164e2da2ef762e04db96be Y256
EPHA7 phosphorylates CDK5 http://pathwaycommons.org/pc2/BiochemicalReaction_2055143050943fc372682de74d33e8bf;http://pathwaycommons.org/pc2/Catalysis_a6377fbcf16ea5ad72c7dd89d6c47616 Y15
EGF phosphorylates GAB1 http://identifiers.org/reactome/R-HSA-177930;http://pathwaycommons.org/pc2/Catalysis_5f058c6fab68e8c4bf30695cb1638257 Y589;Y447;Y659;Y627;Y472
SHC1 phosphorylates MAPK14 http://pathwaycommons.org/pc2/BiochemicalReaction_60b9fd2c8a43a4b575d8abcc48872eb2;http://pathwaycommons.org/pc2/Catalysis_1d88abc0a6c57c1921264d26271dcae9 T180;Y182
EPHA3 phosphorylates CDK5 http://pathwaycommons.org/pc2/BiochemicalReaction_2055143050943fc372682de74d33e8bf;http://pathwaycommons.org/pc2/Catalysis_a6377fbcf16ea5ad72c7dd89d6c47616 Y15
FYN phosphorylates PTPN11 http://pathwaycommons.org/pc2/Catalysis_e454e5307989bac196e7b757b43f9141;;http://pathwaycommons.org/pc2/BiochemicalReaction_935e54f81e551df58da2bcc5d69188d8;http://identifiers.org/reactome/R-HSA-1433488;http://pathwaycommons.org/pc2/Catalysis_7d5d8bddf2061a8e8a657b6de71ca357 Y584;Y546
MAPK14 phosphorylates STAT3 http://pathwaycommons.org/pc2/BiochemicalReaction_ea4c77f9c674174528d59c5f9e9d979b;http://pathwaycommons.org/pc2/BiochemicalReaction_4b899db29fcf4ef6b7518c36962b3945;http://pathwaycommons.org/pc2/ComplexAssembly_0af6448a6012123a944c82020d253545;http://pathwaycommons.org/pc2/BiochemicalReaction_0c7d5414148d6d242a61586911ec29c7;http://pathwaycommons.org/pc2/ComplexAssembly_2b85dfb3a418a631922144608636b185;http://pathwaycommons.org/pc2/Catalysis_f7930a7625b80e589f5aef03c685282e;http://pathwaycommons.org/pc2/BiochemicalReaction_29fbfd128ba7c42107e8e5df6a8581ae;http://pathwaycommons.org/pc2/Catalysis_9283d4bde1df9b4de2bccf1c03c0dbbb;http://pathwaycommons.org/pc2/Catalysis_a76eb303d55453cbbcf6e4b3aa596ddd;http://pathwaycommons.org/pc2/Catalysis_fff2797339dce3a86fd8df096c9289cc;http://pathwaycommons.org/pc2/Catalysis_c9660bb78578fdf7b170546c76792814;http://pathwaycommons.org/pc2/Catalysis_a05f0c2ed73217f92820dd0858f30aa1 Y705;S727
EGFR phosphorylates GRB2 http://pathwaycommons.org/pc2/Catalysis_38e16555f8d8a5c3f7d01fbc26ce9090;http://pathwaycommons.org/pc2/BiochemicalReaction_82aa1aee84abdb6d5c428b6bc972afe1 Y168;Y209
EGFR phosphorylates STAT3 http://pathwaycommons.org/pc2/BiochemicalReaction_4b899db29fcf4ef6b7518c36962b3945;http://pathwaycommons.org/pc2/Catalysis_d2a0aa602d13a93babd256714294112d;http://pathwaycommons.org/pc2/BiochemicalReaction_5763f59f5f6930019f293df57b819285;http://pathwaycommons.org/pc2/BiochemicalReaction_0c7d5414148d6d242a61586911ec29c7;http://pathwaycommons.org/pc2/BiochemicalReaction_3e6354a293ff21474093b2b4a277f6f5;http://pathwaycommons.org/pc2/Catalysis_b7ec7e6c08d6603fde18ab81b0898d2b;http://pathwaycommons.org/pc2/Catalysis_fff2797339dce3a86fd8df096c9289cc;http://pathwaycommons.org/pc2/Catalysis_a05f0c2ed73217f92820dd0858f30aa1 Y705
FYN phosphorylates STAT5A http://identifiers.org/reactome/R-HSA-1470009;http://identifiers.org/reactome/R-HSA-1295540;http://pathwaycommons.org/pc2/BiochemicalReaction_0c7d5414148d6d242a61586911ec29c7;http://pathwaycommons.org/pc2/Catalysis_d9bfb1c4e60eaebcea1c40008daca353;http://pathwaycommons.org/pc2/Catalysis_fff2797339dce3a86fd8df096c9289cc;http://pathwaycommons.org/pc2/Catalysis_195c75bcba7d0263d546807dc19d61b9 Y694
MAPK1 phosphorylates TPR T2137;T2214;S2155;T2116
MAPK9 phosphorylates MARCKS http://pathwaycommons.org/pc2/BiochemicalReaction_3c44d157a029202c9522b33d20663d9a;http://pathwaycommons.org/pc2/Catalysis_a8fa384e8758c6305b1311c38515fd8e S46
24 changes: 24 additions & 0 deletions cypress/fixtures/causative.txt
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MAPK3 21.913190806000443 -61.285255666996704
STAT3 -94.99131217528708 -66.68696703132343
PTK2 165.50076672949754 65.5766316681854
PXN 238.80454177535245 142.3974819618273
FYN -182.46281641515398 -125.98642631144784
PLCG1 -115.97548380863876 -109.36615436187134
BCAR1 2.4819700521299604 119.07229419293888
STAT5A -165.34373392488976 -183.21162393337946
GRB2 -90.09790953737078 17.34419606135569
EGFR -156.99272012129563 -26.830972330266803
GAB1 186.07815636154967 382.9814778550037
EGF -27.50311289171694 -104.5256344960945
MAPK9 7.6190773416544175 -167.10366962452915
MAPK14 -208.14156874058298 -69.32072993125732
SHC1 -263.95820110074703 -123.96485622902571
TNK2 25.97859898502076 -8.132803165928618
WASL 263.95820110074703 65.6588929267896
EPHA7 -259.36957805387203 118.59629478814321
CDK5 -169.21374504317646 117.78837606662054
EPHA3 -169.4162894582728 183.21162393337946
PTPN11 -83.57089123727124 -157.81624702952578
MAPK1 257.46172077425297 -140.21162393337946
TPR 257.46172077425297 -75.15352988421222
MARCKS 107.98840858752786 -161.1904161593413
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