Code

Libs update#668

Code

Merged

wangcj05 merged 83 commits intoidaholab:develidaholab/raven:develfrom PaulTalbot-INL:libs-updatePaulTalbot-INL/raven:libs-updateCopy head branch name to clipboardJul 16, 2018

+1,283-893

Commits

Commits on May 29, 2018

• trying new library versions (manually update if script not run)

  PaulTalbot-INL

  committed
  f65cb12

• matplotlib 2 update regolding, values were indistinguishable

  PaulTalbot-INL

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  1b21980

• added optional PIL install, also fixed docs for raven code interface

  PaulTalbot-INL

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  8bb23bd

Commits on Jun 6, 2018

• stash, working on installation updates

  PaulTalbot-INL

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  2f68d22

• update libraries with tensorflow

  wangcj05

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  e1f7559

• Merge branch 'libs-update' of github.com:PaulTalbot-INL/raven into libs-update

  PaulTalbot-INL

  committed
  3049f9b

• edit

  wangcj05

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  953740f

• improving compatability

  PaulTalbot-INL

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  39801a2

• Merge branch 'libs-update' of github.com:PaulTalbot-INL/raven into libs-update

  PaulTalbot-INL

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  cc061e9

• removing tensorflow for now due to Windows not liking py27

  PaulTalbot-INL

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  e9336b6

• installation docs still undergoing; os-dependent establish conda env created

  PaulTalbot-INL

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  4d9fafd

Commits on Jun 7, 2018

• added default location for windows

  PaulTalbot-INL

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  2d1808a

• verbosity improvement

  PaulTalbot-INL

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  7b13f5d

• improving string check on est conda env os

  PaulTalbot-INL

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  9363195

• fixed inclusions

  PaulTalbot-INL

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  7105c11

• new feature: skip if os

  PaulTalbot-INL

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  87438f1

• renamed namespace variable

  PaulTalbot-INL

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  738f7be

• first draft installation in user manual rewrite

  PaulTalbot-INL

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  4013d18

• stash

  PaulTalbot-INL

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  2b7d531

• disabled netCDF4 until we can update libraries

  PaulTalbot-INL

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  14a36ca

• updated pip list

  PaulTalbot-INL

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  35168b3

• found agreement between h5py and netcdf4

  PaulTalbot-INL

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  6b803c8

Commits on Jun 12, 2018

• regolded text-based files with increased precision printing

  PaulTalbot-INL

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  963e799

• missed one

  PaulTalbot-INL

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  0ddd3d7

• finished updating manual, disabled windows check on always-mismatch test

  PaulTalbot-INL

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  12f8b8d

Commits on Jun 15, 2018

• attempting to make conda definitions work by environment var

  PaulTalbot-INL

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  3009fc7

• added conda_envs_path var to qsub command

  PaulTalbot-INL

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  5aa9965

Commits on Jun 18, 2018

• new and improved install script

  PaulTalbot-INL

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  47667ff

• edits

  PaulTalbot-INL

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  5ee01b1

• passthrough conda defs, maybe we need ravenrc for this

  PaulTalbot-INL

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  5772ac7

Commits on Jun 19, 2018

• reading RC file for loading

  PaulTalbot-INL

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  f2bd9f1

• install instructions updated

  PaulTalbot-INL

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  37c530c

• specified path

  PaulTalbot-INL

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  34951ff

• added condition for RC file not existing in read mode

  PaulTalbot-INL

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  daff8d2

• extraneous file

  PaulTalbot-INL

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  de0f2e7

• cleaned up raven_qsub_command

  PaulTalbot-INL

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  bf02102

• added os verbosity

  PaulTalbot-INL

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  6fddaf4

• changed setup raven libs to establish conda env everywhere

  PaulTalbot-INL

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  ae098e9

Commits on Jun 20, 2018

• improved crow path

  PaulTalbot-INL

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  c4228c7

• activation on load-only

  PaulTalbot-INL

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  b82153d

• load env before make docs

  PaulTalbot-INL

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  aa06cc4

• load libs before pylint check

  PaulTalbot-INL

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  43f1214

• increased verbosity

  PaulTalbot-INL

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  d467373

• fail est_conda_env script on any failures

  PaulTalbot-INL

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  0a9b646

• preventing concurrent locking of hdf5 file

  PaulTalbot-INL

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  7efb0fe

• increased run_tests verbosity

  PaulTalbot-INL

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  a3e3b1f

• removing deploment target variable as a test

  PaulTalbot-INL

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  03d271c

• reverted activation change

  PaulTalbot-INL

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  b4467a2

• better exiting and erroring in est conda env

  PaulTalbot-INL

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  9daaf3b

• put back in macosx deployment target

  PaulTalbot-INL

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  ffce408

Commits on Jun 21, 2018

• attempting to prevent cython activation for making hit

  PaulTalbot-INL

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  a801d61

• added verbosity to run_tests

  PaulTalbot-INL

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  669f783

• trying to avoid cython

  PaulTalbot-INL

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  4944341

• thread state fix maybe?

  PaulTalbot-INL

  committed
  918f7f3

• build script to use instead of make

  PaulTalbot-INL

  committed
  37b96f7

• updates to build_raven

  PaulTalbot-INL

  committed
  55a0588

• build_raven now does both Set python environment and Build Raven steps

  PaulTalbot-INL

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  f5777c9

• more careful failing of scripts, also improved pylint checking

  PaulTalbot-INL

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  74e5677

• loaded libraries in qsub test

  PaulTalbot-INL

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  743b16d

• missing done

  PaulTalbot-INL

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  3784f98

• syntax error fixed

  PaulTalbot-INL

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  9ec1cf9

• no remaking libraries in build_raven for now

  PaulTalbot-INL

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  0ae9210

• added module load to qsub command

  PaulTalbot-INL

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  1906988

Commits on Jul 9, 2018

• changed integration number for comparison stats to 5e4 to avoid seg fault in scipy.integrate.simps

  PaulTalbot-INL

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  afee902

Commits on Jul 10, 2018

• install manual update

  PaulTalbot-INL

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  7b47eac

Commits on Jul 11, 2018

• debugg print statements

  PaulTalbot-INL

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  bd47412

Commits on Jul 12, 2018

• pinned numpy version

  PaulTalbot-INL

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  e3b235a

Commits on Jul 13, 2018

• undoing spacing/precision changes from numpy 14 to numpy 12 in text tests

  PaulTalbot-INL

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  730905e

• some libraries appear to be missing for mpi in raven-devel, adding moose-dev-gcc as a test to qsub command

  PaulTalbot-INL

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  2d456a3

• Merge branch 'libs-update' of github.com:PaulTalbot-INL/raven into libs-update

  PaulTalbot-INL

  committed
  602e5e8

• conda activations in qsub command scripts

  PaulTalbot-INL

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  309059b

• clearing database storage

  PaulTalbot-INL

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  7b1ef48

• stashing for devel checks

  PaulTalbot-INL

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  272629e

• added one module for qsub, also nailed down version of hdf5 for rw issues

  PaulTalbot-INL

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  78ba72f

• fixed mpi run test to use new module

  PaulTalbot-INL

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  f8733df

Commits on Jul 16, 2018

• prevent removal failure from exiting, perhaps

  PaulTalbot-INL

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  06871a7

• review comments

  PaulTalbot-INL

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  b1f9233

• remaining review comments

  PaulTalbot-INL

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  8d4ce41

• working locally, attempting to fix

  PaulTalbot-INL

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  2d5b1c6

• iterating

  PaulTalbot-INL

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  7685502

• iterating

  PaulTalbot-INL

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  cd0f15b

• iterating

  PaulTalbot-INL

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  acf7aca

• cleanup, working now with raven_framework instead of Driver

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  f475b14