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Adding additional options for duplicate reads. #1542

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merged 3 commits into from
Aug 18, 2024
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lbergelson
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This is in response to a feature request from @rickymagner. It doesn't seem like there was any way to see which reads are duplicates. Added some new options to help.

  • new Group By Duplicates option
  • new Duplicates submenu which allows rapid toggling of duplicates between three states
    • Filtered: not visible
    • Visible: treated like normal reads
    • Textures: rendered with a visible slash texture

Showing the new grouping and cross hatching
Screenshot 2024-08-14 at 3 17 20 PM

The new menu option
Screenshot 2024-08-14 at 3 17 28 PM

@lbergelson
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huh, I seem to have an test failure... I'll look into that...

@lbergelson
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Fixed. I made the faulty assumption that renderOptions wasn't allowed to be null there.

@jrobinso
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I love the feature. I wonder if the options should be verbs, i.e "filter", "show", and "texture". I guess texture isn't a verb, can I texture something? Or space isn't a problem, we could be explict, "filter duplicates", "show duplicates", and "texture duplicates". Again I'm not sure texture is really a verb, but its close enough in context.

@rickymagner
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Apparently it can be used as a verb as well. I like making them verbs since it feels more like an action you're performing in the app.

* new GroupBy duplicates option
* new Duplicates submenu which allows rapid toggling of duplicates between three states
  * Filtered: not visible
  * Visible: treated like normal reads
  * Textures: rendered with a visible slash texture
case PHASE:
return al.getAttribute("HP");
case TAG:
return switch (groupBy) {
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This is a big improvement.

@jrobinso jrobinso merged commit cc37d33 into main Aug 18, 2024
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@jrobinso jrobinso deleted the lb_duplicate_coloring branch August 18, 2024 04:52
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3 participants