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24 Open 12 Closed
24 Open 12 Closed
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Issues list

Please provide an output folder (-O)!
#49 opened Dec 16, 2023 by BERICP01
haplotype-resolved PLAC-seq
#47 opened Mar 8, 2022 by BenxiaHu
MAPS with Squirrel Genome
#46 opened Mar 1, 2022 by Elliott77
A test case for Arima-MAPS
#44 opened Feb 9, 2022 by ryao-mdanderson
4
How to define significant interactions by merging 3 different biological replicates?
#43 opened Jan 17, 2022 by xumai-du
marker gene of cerebral cortex cells
#42 opened Sep 13, 2021 by cynthier
VGAM pospoisson model fails with "Error in if (one.more) { : missing value where TRUE/FALSE needed"
#41 opened Aug 15, 2021 by jaavedm
1
Running MAPS on already mapped, paired and deduplicated file.
#40 opened Jul 14, 2021 by Zojka
Could not retrieve index file for 'A.merged.srtn.bam'
#39 opened May 14, 2021 by jiangshan529
9
Is MAPS only for cutting enzyme MboI?
#38 opened May 14, 2021 by jiangshan529
2
question about run the bash script
#37 opened May 13, 2021 by jiangshan529
2
analyze promoter capture Hi-C
#36 opened May 12, 2021 by BenxiaHu
1
parameter for ignoring read duplicates
#34 opened Dec 13, 2020 by jaavedm
1
biological replicates
#27 opened Oct 14, 2020 by jmbeesley
1
MAPS for other genomes
#26 opened Aug 23, 2020 by divyanandu
1
potential_chrs may be greater than 22
#23 opened May 8, 2020 by jianhong
Error when doing chr13
#16 opened Nov 19, 2019 by HuiHuang001
Could you describe the content of the file pointed to in $genomic_feat_filepath
#14 opened Oct 14, 2019 by mblanche
5
Few interactions can be detected by MAPS
#8 opened May 8, 2019 by zhuyezhang
1
Incomplete MAPS output
#7 opened Apr 12, 2019 by aperreault
4
Can I generate hic without going through the whole pipeline again?
#4 opened Dec 20, 2018 by sethb3744
3
Possible takes output from a HiC-Pro run for MAPS?
#3 opened Dec 12, 2018 by jphe
4
String index out of range error
#2 opened Nov 29, 2018 by mapsuser1
6
pysam.sort issue
#1 opened Nov 21, 2018 by sethb3744
2
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