IKMB Association Testing Pipeline for mGWAS and PheWAS

Documentation

1. What happens in this pipeline?
2. Installation and configuration
3. Running the pipeline
4. Output
5. Troubleshooting

Citation instructions

If you use our software in any published work, please cite our BIGwas software and methods paper:

Kässens JC, Wienbrandt L, Ellinghaus D. BIGwas: Single-command quality control and association testing for multi-cohort and biobank-scale GWAS/PheWAS data. Gigascience. 2021 Jun 29;10(6):giab047.