WF_NTP

Wide-field nematode tracking platform v3.4.0

The WF_NTP is a platform for analyzing movement behaviour of C. elegans. It is licenced under Creative Commons by-nc-sa 4.0.

Running the code

• On windows, mahotas requires "Microsoft Visual C++ Build Tools": https://visualstudio.microsoft.com/downloads/
  • Be sure to select the C++ Build Tools during installation
• install numpy with pip install numpy or pip3 install numpy
• Download the software from https://github.com/impact27/WF_NTP
• Open a terminal and go to the location of the WF_NTP software
• pip install . (or pip3 install .)
• run WF_NTP_app

Tests

The tests are run with pytest. You can install pytest with pip install pytest

Overview

The WF_NTP software runs in python and only requires an installation of python and integrated libraries. Please read all instructions in our Nature Protocols paper https://doi.org/10.1038/s41596-020-0321-9.

Demos

Demo-data, including the movie, the generated thresholding images and settings file, can be downloaded via https://doi.org/10.17863/CAM.46983.