1.3.8

Automatically remove secondary and supplementary alignments from user-generated bam files

1.3.7

Fix crashes when using --threads 1 and reduce the time between checks at the Hapo-G steps so very fast jobs can be finished way faster.

1.3.6

Fix the TypeError encountered in #31.

1.3.5

Two new options:

• --samtools-mem: Equivalent to the -m option of samtools sort. A string representing the amount of memory reserved per-thread by samtools sort (default: 5G). Reduce this if you encounter some memory problems during the mapping step
• --hapog-threads: Number of Hapo-G processes to run in parallel. By default it is the same as -t

Also corrected the RessourceWarnings that were raised by Python >= 3.8

Fix metadata not found

1.3.4

Up version

Fix crashes when the number of threads is equal to 1

1.3.3

Update setup.py

Bioconda release

1.3.2

Define custom error function for clang

Potential fix for UnicodeDecodeError

Potential fix for #17

v1.3

Bugfix for long-reads polishing.
Checks that the long-reads path is valid before launching alignments.

1.2

Now handles cases where a BAM file is empty.