Neuronavigation GUI revamp

[mahansh564]

Overhaul of Invesalius UI
I have resolved possible conflicts but some more testing is recommended.

Some major changes for current developers:

1. E-Field has been moved from task_navigator.py to task_efield.py for semantic reasons.
2. Tractography has been moved from task_navigator.py to task_tractography for semantic reasons.
3. Important legacy code can be found at the end of the file in a comment.

Attempts to fix #378 #592 #506 #298 #594 #595 #599

[mahansh564]

I have just one final suggestion, similar to the pull request #634, the "Show coil" could be enabled when the navigation is on too.

Fixed!

[rmatsuda]

Many thanks, @mahansh564! I just found an issue, sorry I have two more suggestions. When changing an invesalius project, the fiducials, both image and tracker, are not resetting. And the stimulator is been removed, although, the stimulator can be kept between inv projects. The second suggestion is related to the Data lower fold panel. For the mode without navigation its starting collapsed, I think it should be as before, collapsed=False

[mahansh564]

Many thanks, @mahansh564! I just found an issue, sorry I have two more suggestions. When changing an invesalius project, the fiducials, both image and tracker, are not resetting. And the stimulator is been removed, although, the stimulator can be kept between inv projects. The second suggestion is related to the Data lower fold panel. For the mode without navigation its starting collapsed, I think it should be as before, collapsed=False

Fixed the first one! Not sure that I understand the second one. It is currently starting with the data panel not visible. Should it be visible? I had changed it because when project is not loaded the data tab just shows empty columns if it is collapsed

[rmatsuda]

I open one invesalius project, then I clicked to open another project and didnt removed the 3D objects from the previous project.

[rmatsuda]

The tracker fiducials need to be reset as well. Change a invesalius project means to change a patient (volunteer). And the tracker fiducials need to be changed.

[mahansh564]

I open one invesalius project, then I clicked to open another project and didnt removed the 3D objects from the previous project.

I'll look at this tomorrow in the lab but my laptop doesn't seem to have the problem.

[mahansh564]

The tracker fiducials need to be reset as well. Change a invesalius project means to change a patient (volunteer). And the tracker fiducials need to be changed.

I fixed this in the FIX: Close Project fixes. Does it not work?

[rmatsuda]

The tracker fiducials need to be reset as well. Change a invesalius project means to change a patient (volunteer). And the tracker fiducials need to be changed.

I fixed this in the FIX: Close Project fixes. Does it not work?

Now I see the problem. When I change between projects, the active tab keeps the same as the last project (last one). I think just changing to the first one (Image) will work fine.

[rmatsuda]

Many thanks, @mahansh564! I just found an issue, sorry I have two more suggestions. When changing an invesalius project, the fiducials, both image and tracker, are not resetting. And the stimulator is been removed, although, the stimulator can be kept between inv projects. The second suggestion is related to the Data lower fold panel. For the mode without navigation its starting collapsed, I think it should be as before, collapsed=False

Fixed the first one! Not sure that I understand the second one. It is currently starting with the data panel not visible. Should it be visible? I had changed it because when project is not loaded the data tab just shows empty columns if it is collapsed

I think is fine to keep it like that. @tfmoraes @paulojamorim Do you agree?

[mahansh564]

The tracker fiducials need to be reset as well. Change a invesalius project means to change a patient (volunteer). And the tracker fiducials need to be changed.

I fixed this in the FIX: Close Project fixes. Does it not work?

Now I see the problem. When I change between projects, the active tab keeps the same as the last project (last one). I think just changing to the first one (Image) will work fine.

That is done in MISC: Some fixes.

[mahansh564]

I open one invesalius project, then I clicked to open another project and didnt removed the 3D objects from the previous project.

I'll look at this tomorrow in the lab but my laptop doesn't seem to have the problem.

Any hints on where this problem might be? We are not facing the problem in the lab.

[rmatsuda]

I open one invesalius project, then I clicked to open another project and didnt removed the 3D objects from the previous project.

I'll look at this tomorrow in the lab but my laptop doesn't seem to have the problem.

Any hints on where this problem might be? We are not facing the problem in the lab.

I couldn't replicate this anymore. It looks like some commit fixed it.

Thanks again for the impressive work, @mahansh564! Thats a very good improvement for neuronavigation.
I have no more comments about the GUI.

[mahansh564]

I open one invesalius project, then I clicked to open another project and didnt removed the 3D objects from the previous project.

I'll look at this tomorrow in the lab but my laptop doesn't seem to have the problem.

Any hints on where this problem might be? We are not facing the problem in the lab.

I couldn't replicate this anymore. It looks like some commit fixed it.

Thanks again for the impressive work, @mahansh564! Thats a very good improvement for neuronavigation. I have no more comments about the GUI.

Thank you @rmatsuda!

[vhosouza]

Extensively tested by me and @rmatsuda. This PR makes a major change to the UI and controls associated with the neuronavigation, the robot control, the tractography and targeting visualization.

This can potentially break compatibility with previous projects and ongoing branches and needs to be tested further.

Thank you for the extensive and amazing work @mahansh564!