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1. singlet singlet Public

   Single cell RNA Seq data analysis with quantitative phenotypes

   Python 13 7

2. organic-box-factory organic-box-factory Public

   Docker/Singularity containers for high-throughput sequencing pipelines in the cloud and on the ground

   Shell 1 2

3. lshknn lshknn Public

   k nearest neighbor (KNN) graphs via Pearson correlation distance and local sensitive hashing (LSH).

   Python 16 2

4. htseq/htseq htseq/htseq Public

   Forked from simon-anders/htseq

   HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.

   Python 95 30

5. seqanpy seqanpy Public

   Fast pairwise sequence alignment using SeqAn, in Python.

   C++ 13 7

6. hivwholeweb hivwholeweb Public

   Web application for deep sequencing on longitudinal HIV-1 samples from patients.

   JavaScript 2 5