Important and nice options for homology search
Added control over DIAMOND search
--diamond-mode
accepts six options (by decreasing search time and increasing sensibility): fast
, mid_sensitive
, sensitive
, more_sensitive
, very_sensitive
and ultra_sensitive
.
Helps to dramatically decrease search times, but also reduce memory usage and apparently disk usage as well (no ideia why this one).
Added parameter for max memory
Set with --max-memory
, read as float in Gb.
Allows to calculate DIAMOND parameters b and c automatically.
Also two small bug fixes
Fixed the case where database was inputted with --skip-db-check
and as a FASTA file - UPIMAPI would input the FASTA database directly to DIAMOND.
Fixed outputting days as float. Days don't float.