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  1. SPOT-RNA SPOT-RNA Public

    RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.

    Perl 95 33

  2. SPOT-RNA2 SPOT-RNA2 Public

    Improved RNA Secondary Secondary Structure Prediction using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learning

    Perl 25 8

  3. RNAsnap2 RNAsnap2 Public

    Single-sequence and Profile-based Prediction of RNA Solvent Accessibility Using Dilated Convolution Neural Network

    Perl 11 4

  4. RNAcmap RNAcmap Public

    A Fully Automatic Method for Predicting Contact Maps of RNAs by Evolutionary Coupling Analysis

    Python 9 2

  5. SPOT-RNA-2D SPOT-RNA-2D Public

    SPOT-RNA-2D: Predicting RNA distance-based contact maps by integrated deep learning on physics-inferred base-pairing and evolutionary-derived coupling

    Perl 8 2

  6. SPOT-RNA-1D SPOT-RNA-1D Public

    RNA Backbone Torsion and Pseudotorsion Angle Prediction using Dilated Convolutional Neural Networks

    Python 6 1