Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add cow to the Docker image #363

Merged
merged 7 commits into from
Dec 17, 2021
Merged

Add cow to the Docker image #363

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
7 commits
Select commit Hold shift + click to select a range
2093085
Add cow to the Docker image
cansavvy Dec 17, 2021
f9101eb
Add gitcreds too
cansavvy Dec 17, 2021
5a106a3
Merge branch 'main' into cansavvy/add-cow
cansavvy Dec 17, 2021
1f3c449
Use install_bioc.r script
cansavvy Dec 17, 2021
316772b
Revert "Use install_bioc.r script"
cansavvy Dec 17, 2021
a13fe12
try installing gitcreds this way
cansavvy Dec 17, 2021
82c831a
Need libglpk40
cansavvy Dec 17, 2021
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
6 changes: 5 additions & 1 deletion docker/Dockerfile
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,8 @@ RUN apt-get update && apt-get install -y --no-install-recommends apt-utils dialo
RUN apt-get install -y --no-install-recommends \
libxt6 \
libpoppler-cpp-dev \
vim
vim \
libglpk40

# Remove old symlinks to old pandoc
RUN unlink /usr/lib/rstudio-server/bin/pandoc/pandoc
Expand Down Expand Up @@ -55,6 +56,9 @@ RUN Rscript -e "install.packages( \
COPY git_token.txt .
COPY github_package_list.tsv .

# cow needs this dependency:
RUN Rscript -e "devtools::install_version('gitcreds', version = '0.1.1', repos = 'http://cran.us.r-project.org')"

# Didactr needs this dependency:
RUN Rscript -e "devtools::install_version('lifecycle', version = '1.0.0', repos = 'http://cran.us.r-project.org')"

Expand Down
3 changes: 2 additions & 1 deletion docker/github_package_list.tsv
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -6,4 +6,5 @@ jhudsl/didactr cde4598c10f2b5e2e31b47fe94ca1b02db420e10
jhudsl/leanbuild HEAD
tidyverse/rvest 4fe39fb5089512d77b6a9cc026e5c895258ff6ce
R-lib/testthat e99155af85261e065192feb946dcfa6679cffae4
rstudio/bookdown 88bc4ead8562ea281838041c795b38fc4a6a7165
rstudio/bookdown 88bc4ead8562ea281838041c795b38fc4a6a7165
jhudsl/cow HEAD