Boxes #524
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Boxes #524
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This reverts commit f95a790. forgot I was on main#
This reverts commit fbc1c3e. forgot I was on main
…_Bookdown into main pulling new changes
…_Bookdown into main getting remote changes
…_Bookdown into main merging in remote changes
…_Bookdown into main getting remote changes
…_Bookdown into main getting remote changes
…_Bookdown into main getting remote changes
…_Bookdown into main getting remote changes - conflicted with out-of-date style files
…_Bookdown into main getting remote changes
…_Bookdown into main getting remote changes
…_Bookdown into main getting remote changes
…_Bookdown into main getting remote changes
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No spelling errors! 🎉 |
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No broken URLs detected! 🎉 |
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Re-rendered previews from the latest commit:
Updated at 2022-04-05 with changes from 8b96474 |
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Going to merge this! |
cansavvy
added a commit
that referenced
this pull request
Oct 6, 2022
* Revert "updating templates_to_edit image" This reverts commit f95a790. forgot I was on main# * Revert "updating issue pics" This reverts commit fbc1c3e. forgot I was on main * Add report-maker.yml here. (#512) * delete report.maker.yml * Add report-maker.yml here * Need to add + 1 because the column names don't count * change strategy for declaring error_min * Try to fix syntax around inputs.error_min * Try this * Update report-maker.yml * substract 1 * Forgot to delete old attempt * Try to fix chk_results declarations * Get rid of straggling quote * Print out error number * Fix reports * Set version * specify git_path * Fix file path * Try copying over? * ls workspace * Nope that didn't work * Set version * Change version * Check all the urls * Don't need to specify git_path * force pass true * exclude docs and manuscript folder * exclude files * try to add Rmd * Write our own url-checking script and get away from using url-checker-actions (#515) * Add url-checker to docker image * Add url-check.R adds! * Revert "Add url-checker to docker image " This reverts commit fe5c7ed. * Update report-maker.yml * Add course formats bullet point template (#516) * Add course formats bullet points to template * Also add ottrpal to dictionary.txt * Render bookdown * Update scripts so url check is fixed (#518) * Update scripts * try to fix url checker * Add a broken url as a test * rearrange steps * get rid of -1 * get rid of extra stuff * Fix results Thing * Fix file path * .csv -> .tsv * Revert "Add a broken url as a test" This reverts commit 973453f. * Add files via upload * Add ability to ignore a url in the url checker (#520) * Try to ignore some urls * If there's not a file, then download it * Fix some things * Test deleting the files * Revert "Test deleting the files" This reverts commit b8707f0. * Delete report-maker.yml * Fix false URL finds * Fix false URL finds (#521) * Update ignore-urls.txt * Update url-check.R * Try to fix url identifier * More polishing to url-check.R * Polishing polishing * A few more regex refinings * Update sync.yml (#522) * Polishing url-check.R (#523) * Fix false URL finds * Try to fix url identifier * More polishing to url-check.R * Polishing polishing * A few more regex refinings * Update to stop url at } * Fix } * Boxes (#524) * Revert "updating templates_to_edit image" This reverts commit f95a790. forgot I was on main# * Revert "updating issue pics" This reverts commit fbc1c3e. forgot I was on main * adding ITN style code for boxes * adding images and general style code for boxes * showing examples of style boxes * Render bookdown * Boxes (#525) * Revert "updating templates_to_edit image" This reverts commit f95a790. forgot I was on main# * Revert "updating issue pics" This reverts commit fbc1c3e. forgot I was on main * adding ITN style code for boxes * adding images and general style code for boxes * showing examples of style boxes * moving images from assets to subdir called box_images to allow for easy sync of these images * forgot about dictionary image * updating paths for style.css file for general template use * updating paths for itn style doc * adding asset box image dir to sync * add boxes to GDSCN css code * adding boxes to AnVIL css code * adding boxes to DataTrail css * Render bookdown * make AnVIL_Template group in sync.yml * Revert "make AnVIL_Template group in sync.yml" This reverts commit 4490781. * make an AnVIL_Template group in sync.yml (#527) * Boxes (#529) * Revert "updating templates_to_edit image" This reverts commit f95a790. forgot I was on main# * Revert "updating issue pics" This reverts commit fbc1c3e. forgot I was on main * adding ITN style code for boxes * adding images and general style code for boxes * showing examples of style boxes * moving images from assets to subdir called box_images to allow for easy sync of these images * forgot about dictionary image * updating paths for style.css file for general template use * updating paths for itn style doc * adding asset box image dir to sync * add boxes to GDSCN css code * adding boxes to AnVIL css code * adding boxes to DataTrail css * adding initial version of reflection box * adding reflection box to other style sets * Update sync.yml (#526) * Update sync.yml * Edit Credits section * Render bookdown * Render bookdown * Update sync.yml (#530) * Update sync list for AnVIL_Template (#538) Subscribing to `style.css` so we can get updates like those nice new style boxes! * Branches sometimes overwrite each other - trying to fix (#537) * Try to update the git push * Add broken urls and spelling errors * This appears to work better * Revert "Add broken urls and spelling errors" This reverts commit b4b49e6. * clean and consolidate styling for callout boxes (#541) * clean and consolidate styling for callout boxes * remove old style boxes entirely * Render bookdown * Update transfer-rendered-files.yml - specify docker image (#542) * Try to update the git push * Add broken urls and spelling errors * This appears to work better * Update transfer-rendered-files.yml * Revert "Add broken urls and spelling errors" This reverts commit b4b49e6. * Update to ottrpal:latest to test * temporarily turn on leanpub * forgot the jhudsl/ part * Don't specify latest * Fix spec * Switch to main * restore default options * fixing rendering of rest of ch 2 * adding more inform about header sytax and syntax in general, as well as more about stylized boxes. * adding back the borders to the boxes that got removed * trying to add back doc file * trying to add back doc file * trying to add back doc files * trying to add back doc files for docs/coursera * trying to add back doc files for docs/no_toc * trying to add back doc files for docs/404.html * trying to add back doc files for docs/ * trying to add back doc files for Course_Name.rds * trying to add back doc files for book.bib * updating spelling * adding more structure for subheadings and more information * adding more documentation and updating pdf example * updating readme to include rendered version * adding rendered link * Render bookdown * Add styler to render all workflow * Revert "Add styler to render all workflow" This reverts commit e24bf2d. * Update ignore-urls.txt * Add git config to address no commit * Add ugly code to test * Add explicit git checkout * Add branch name for origin * Try this * Fix branch declaration * Fix that * Try REF_NAME * head_ref * Style Rmds * Add styler to render all workflow (#546) * Update README.md * Add ottr-fy.R script * Update README.md * Update README.md * Add latest ottr-fy.R script * Update with bookdown option * Bump create-issue-from-file action (#552) * Delete style-sets/AnVIL directory (#553) * Render bookdown * Remove AnVIL repos from sync * Update sync.yml (#554) * Create super bare bones theme for fhdasl stuff * Remove fhdasl_style from path * Add things to dictionary * remove GDSCN style-set * Render bookdown * Render bookdown * Get rid of archive of spelling results * Add docker-test here * Delete the docker files here because they are managed in ottr-docker * Get 404s properly (#564) * Get 404s * Restore to failed/success so downstream works * Need some more logic * Minor fix * SHouldn't have https://jhudatascience.org/{Course_Name} anymore anyway * Add pull-request.yml to use report-maker.yml here (#513) * Update Staging branch with what's in main (#438) * Return to pre-gist method of spell check (#409) * Return to pre-gist method of spell check * Get rid of gist stuff on delete-preview too * Temporarily add spelling errors to test * Commit before testing * Switch to use -z * Fix git diff step * Just look at the local main since it should be up to date * make it simple * Get rid of double bracket * No brackets? * Revert "Temporarily add spelling errors to test" This reverts commit 9e9a932. * Update screenshot for new repo (#410) * Update template button screenshot (#411) * Update screenshot for new repo * Update template button too * See if `fetch-depth: 0` fixes the shallow problem (#412) * Update screenshot for new repo * Update template button too * fetch it all * Switch to devtools::session_info() * Render bookdown * Update screenshot for git-secret.png (#414) * Update screenshot for git-secret.png * Crop off irrelevant git secrets * syntax updates * Needed a semicolon * Fix branch handling * Update spell check set up * Update main * add brackets * set shell intentionally * fix if statements * Create PR if it can't push directly * Make sure it merges * Alter branch test * quote the 0? * switch to -z * Delete extra then * This should work * Change to preview- again whoops * Add a push step * Update starting course * set upstream * Set to bash intentionally (#419) * set to bash * Update * no workflow dispatch * Test leanpub from here (#420) * Test leanpub from here * Update comments * Add check quizzes too * Couple edits * Shut them off for now * Update comments * Render leanpub * Minor polishing of steps (#421) * Test leanpub from here * Update comments * Add check quizzes too * Couple edits * Shut them off for now * Update comments * Note which places needed to be uncommented * Just making the step clearer * Add a git fetch * Add quizzes to spell check * Update README.md * Render leanpub * Add new repository to sync * Polish Examples in Rmds (#426) * Echo false in examples * Updating wiki * Render bookdown * Render bookdown (#427) * Prep for ottr rename (#428) * Render bookdown * Make docker unfail (#431) * Make docker not fail * Add Dockerfile example * Get rid of extra line * Skip build for this test * comment out push part too for this test * undo test Dockerfile * Render bookdown * Try out screenshot creator as a part of the new Leanpub set up (#422) * Try out screenshot creator * Fix spacing * Get rid of typo * fix argument spec * Fix git pat handling * Add copy over assets step * Try this * Try installing just the packages we need * Add install of remotes * Try using devtools instead * try set environ * Try to install R first * Add prereqs * Try rocker r-base * Put installations in script * Try different strategy * Switch to tidyverse * Make directory in bash * I guess I'm making this its own docker image * This isn't working but I want it in case I come back to it * Switch to wkhtmltopdf * Lets' try it * Trying leanbuild steps on their own dockerfile * Test build of leanbuild docker image * Try out webshot r package * fix file path to script * Oh. Actually fix it * Try installing webshot::install_phantomjs * Try installing phantomjs on its own first * Set this up * Build from jhudsl/course_template * Switch back to main dockerfile * assets problem * It works! * Revert "assets problem" This reverts commit 2aada9b. * Add markdown maker basics * Push this version before I delete things * Clean up * Delete the pdfs * Reconfig with latest ottr package changes * Turn on render again * Add PR instead * Move copying step * Add an :: that was missing * Fix arguments for getting pages url * misplaced quotes * Add make_book_txt = TRUE * It's working! Undo the commenting part * Set base to main * Revert "It's working! Undo the commenting part" This reverts commit 92e5081. * rm manuscript folder * Just commit to main * Delete old manuscript files * Copy over assets * Render bookdown * Remove manuscript if it is there * Set group and user id to get rid of permissions probs * Forgot \ 's * Render bookdown * Make it force push * only force manuscript dir * Render Leanpub * Render Leanpub * Render Leanpub * Add to transfer PRs * Delete manuscript folder * Add to sync.yml * Render Leanpub * Remove _Template bit * Add coursera bit and _Quizzes * Clean out manuscript folder when starting new course * Make transfers go to the right folder * add / * Update sync.yml with OTTR_Template_Website (#437) Co-authored-by: jhudsl-robot <itcrtrainingnetwork@gmail.com> Co-authored-by: GitHub Actions <actions@github.com> Co-authored-by: jhudsl-robot <97678365+jhudsl-robot@users.noreply.github.com> Co-authored-by: Tiffany Miller <tiffanym@broadinstitute.org> Co-authored-by: jhudsl-robot <itcrtrainingnetwork@gmail.com> * Delete packages.bib * Minor edits to index.Rmd * Delete extraneous files * Consolidate and config a pull request GHA (#448) * Create config_automation.yml * Update style-and-sp-check.yml * Update the filename 😑 * Checking dependency * Update style-and-sp-check.yml * Testing that file is carried over * Add toggle to second check * Change config to test * Test removal of some extra text * Change config to test (again) * Update config_automation.yml * What does the output look like with more checks added? * Fix spacing * Forgot "steps:" * BIG YAML * Get rid of other ones * Fix names * Add needs * Try adding docker to it * Fix syntax * Gotta check it out first * Extra "if" lying around * Set logically differently * Testing change * Add Ava's suggestions! Co-authored-by: AM Hoffman <avamariehoffman@gmail.com> * Consolidate and config a rendering GHA (#449) * Create config_automation.yml * Update style-and-sp-check.yml * Update the filename 😑 * Checking dependency * Update style-and-sp-check.yml * Testing that file is carried over * Add toggle to second check * Change config to test * Test removal of some extra text * Change config to test (again) * Update config_automation.yml * What does the output look like with more checks added? * Fix spacing * Forgot "steps:" * BIG YAML * Get rid of other ones * Fix names * Add needs * Try adding docker to it * Make a render-all yaml * Fix syntax * Gotta check it out first * Extra "if" lying around * Set logically differently * Echo no branch to delete if there is none to delete * Update sync.yml * fix syntax * Fix name of render-all * Add names Co-authored-by: AM Hoffman <avamariehoffman@gmail.com> * Update pull-request.yml to use report-maker.yml * Need to add + 1 because the column names don't count * Turn on quiz check for testing * Add comment * Try out different syntax for + 1 * Add errors to test * Add a quiz error * Add url error * Make quiz error * Add question error * Add URL * Switch version of url-checker * Add url-checker to docker image * Add url-check.R adds! * Update report-maker.yml * fix script * Get rid of fake errors * Revert "Add question error" This reverts commit dc411cb. * Fix quiz * Add a correct answer * Stop checking quizzes * Try out new github action * Fix indents * Try this out? * Fix comments * git force --add * Updates * Get rid of secrets: * Try ottr-reports set up * Get rid of secrets. * Test secrets.GH_PAT * Ignore checks for testing purposes * Try secrets.GH_PAT again * Try supplying secret through environment * Switch order of steps * Try somewhere else * use ls- R again * Try again * Re-run without script directory perl thing * Try $GITHUB_WORKSPACE * Maybe we need to check out files in report_maker * Use basename * Try to fix syntax * Name output variable in earlier step * Declare report name * Add error URL * Fix error url * Drop quotes and {} * echo it maybe * add more explicit variable declaration * Drop brackets * no quotes * Try to fix quotes * Try quotes * Try `contains()` * Commit reports to the branch * Try to supply token * add secrets designation * Use V3 checkout * switch gh_pat designation * login as jhudsl-robot * Move the steps: * No login * Specify GH_PAT * Try this instead * Try environment thing * Revert "Try environment thing" This reverts commit ac469b8. * Don't set inputs.gh_pat * set git config * Try to fix error 11 * Fix an inputs.gh_pat * specify ref * Adjust the logic * git add adjust * Add errors to check that this is working * Try again * Calculate error number by hand * Declare number of errors * Try this instead * Forgot a $ * Try to fix number thing * Still trying to fix error count * print out error numbers * Add spelling errors * Try to set up the error_num another way * Print out error numbers * Remove errors and see if this works * Fix branch merge option Co-authored-by: GitHub Actions <actions@github.com> Co-authored-by: jhudsl-robot <97678365+jhudsl-robot@users.noreply.github.com> Co-authored-by: Tiffany Miller <tiffanym@broadinstitute.org> Co-authored-by: jhudsl-robot <itcrtrainingnetwork@gmail.com> Co-authored-by: AM Hoffman <avamariehoffman@gmail.com> * Call report-maker.yml from here (#565) * Call report-maker.yml from here * Delete report-maker.yml from this repo * Update links in automatic issues (#567) * Update links in automatic issue set-repo-settings * remove duplicate GH_PAT * update more links * Update links in update-enrollment.md * update templates-to-edit * Update all refs to Wiki with new stuff * Update link in .github/automatic-issues/templates-to-edit.md * Update another link in .github/automatic-issues/set-repo-settings.md * another link * another link Co-authored-by: Candace Savonen <cansav09@gmail.com> * Render bookdown * switch the name and refs of course_template to base_ottr (#569) * switch to base_ottr * Ad to config_automation.yml * Replace all instances of "jhudsl/course_template" -> "jhudsl/base_ottr" * Render bookdown * Update sync.yml Co-authored-by: Carrie Wright <cwrigh60@jhu.edu> Co-authored-by: jhudsl-robot <itcrtrainingnetwork@gmail.com> Co-authored-by: Carrie Wright <23014755+carriewright11@users.noreply.github.com> Co-authored-by: Katherine Cox <katherinecox@jhu.edu> Co-authored-by: avahoffman <avamariehoffman@gmail.com> Co-authored-by: GitHub Actions <actions@github.com> Co-authored-by: jhudsl-robot <97678365+jhudsl-robot@users.noreply.github.com> Co-authored-by: Tiffany Miller <tiffanym@broadinstitute.org>
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Purpose/implementation Section
What changes are being implemented in this Pull Request?
Want to add the option for my style boxes to make statement stand out.
What was your approach?
updated style.css file, as well as the one for ITN and added images for them to the assets folder