ci: try fix pytest run #15

	name: Integration Tests & Code Style

	on:
	push:
	branches: [ master, dev ]
	pull_request:
	branches: [ master, dev ]

	jobs:
	build-linux:
	runs-on: ubuntu-latest

	steps:
	- name: Checkout Repo
	uses: actions/checkout@v2

	- name: Set up Python
	uses: actions/setup-python@v2

	- name: Install dependencies
	run: \|
	$CONDA/bin/conda env update --file environment.yml --name base

	- name: Install marbel package
	run: \|
	python -m pip install --upgrade pip
	pip install ./

	- name: Lint with flake8
	run: \|
	$CONDA/bin/flake8 src/marbel/

	- name: Run tests with pytest
	run: \|
	pytest tests --doctest-modules
	#--cov=src/marbel --cov-report=xml

	- name: Convert coverage to lcov format
	run: \|
	$CONDA/bin/coverage lcov

	# - name: Send coverage report to Coveralls
	# uses: coverallsapp/github-action@master
	# with:
	# github-token: ${{ secrets.GITHUB_TOKEN }}
	# path-to-lcov: "coverage.lcov"

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