fix: flake8 linter issues (W293)

src/marbel/data_generations.py

@@ -29,7 +29,7 @@ def draw_random_species(number_of_species):
 def create_ortholgous_group_rates(number_of_orthogous_groups, max_species_per_group, seed=None):
     """
     Creates a list of group sizes for orthogroups, such that the maximum group size is less than or equal to
-    the specified maximum species per group and the total number of orthogroups matches the specified number 
+    the specified maximum species per group and the total number of orthogroups matches the specified number
     of orthogroups.
 
     Parameters:
@@ -285,11 +285,11 @@ def aggregate_gene_data(species, species_abundances, selected_ortho_groups, read
 def convert_fasta_dir_to_fastq_dir(fasta_dir, gzipped=True):
     """
     Converts a directory containing .fasta files to a directory containing .fastq files. If gzipped is True, the output files will be gzipped.
-    
+
     Parameters:
     - fasta_dir (str): The path to the directory containing the .fasta files.
     - gzipped (bool): Whether the output files should be gzipped.
-    
+
     Note that the input .fasta files will be removed after the conversion is done.
     """
     fasta_dir = Path(fasta_dir)
@@ -312,7 +312,7 @@ def write_as_fastq_gz(fa_path, fq_path):
     """
     Converts a .fasta file to a .fastq.gz file. The function reads the .fasta file,
     adds phred quality scores to each sequence and writes the output to a .fastq.gz file.
-    
+
     Args:
         fa_path (str): Path to the input .fasta file.
         fq_path (str): Path to the output .fastq.gz file.
@@ -327,7 +327,7 @@ def write_as_fastq(fa_path, fq_path):
     """
     Converts a .fasta file to a .fastq file. The function reads the .fasta file,
     adds phred quality scores to each sequence and writes the output to a .fastq file.
-    
+
     Args:
         fa_path (str): Path to the input .fasta file.
         fq_path (str): Path to the output .fastq file.
@@ -342,7 +342,7 @@ def summarize_parameters(number_of_orthogous_groups, number_of_species, number_o
                          outdir, max_phylo_distance, min_identity, deg_ratio, seed, output_format, read_length, result_file):
     """
     Writes the simulation parameters to the result_file.
-    
+
     Args:
         number_of_orthogous_groups (int): The number of orthologous groups.
         number_of_species (int): The number of species.