Zernike xy aberration #207
Workflow file for this run
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| name: batoid CI | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - releases/* | |
| pull_request: | |
| branches: | |
| - main | |
| - releases/* | |
| workflow_dispatch: | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ ubuntu-latest ] | |
| py: [3.8, 3.9, '3.10', 3.11] | |
| CC: [ gcc ] | |
| CXX: [ g++ ] | |
| include: | |
| - os: macos-latest | |
| py: 3.8 | |
| CC: cc | |
| CXX: c++ | |
| - os: ubuntu-latest | |
| py: 3.8 | |
| CC: clang | |
| CXX: clang++ | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: recursive | |
| fetch-depth: 2 | |
| - name: Print github context properties | |
| run: | | |
| echo 'event: ${{ github.event_name }}' | |
| echo 'sha: ${{ github.sha }}' | |
| echo 'ref: ${{ github.ref }}' | |
| echo 'head_ref: ${{ github.head_ref }}' | |
| echo 'base_ref: ${{ github.base_ref }}' | |
| echo 'event.before: ${{ github.event.before }}' | |
| echo 'event.after: ${{ github.event.after }}' | |
| - name: Set up Python ${{ matrix.py }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.py }} | |
| - name: Cache pip | |
| uses: actions/cache@v3 | |
| with: | |
| path: | | |
| ~/.cache/pip | |
| $HOME/Library/Caches/Homebrew | |
| /usr/local/Cellar | |
| key: ${{ runner.os }}-${{ matrix.py }}-${{ matrix.CXX}}-pip-${{ hashFiles('requirements.txt') }} | |
| - name: Install libfftw, etc. on linux (needed for GalSim) | |
| if: matrix.os == 'ubuntu-latest' | |
| run: | | |
| echo ${{ matrix.os }} | |
| sudo -H apt-get -qq update | |
| sudo -H apt-get install -y libfftw3-dev libeigen3-dev | |
| - name: Install libfftw, etc. on MacOS | |
| if: matrix.os == 'macos-latest' | |
| run: | | |
| # brew update takes forever to run. Hopefully won't need to enable this too often. | |
| # Note: The || true bit here is because brew returns an error code if everything is | |
| # already installed, which is goofy. So || true means these always give | |
| # non-error values. If there really is an error, we should notice later | |
| # when trying to use whatever package failed to install. | |
| #brew update || true | |
| brew install fftw wget || true | |
| brew upgrade wget || true | |
| brew link --overwrite fftw gcc wget || true | |
| brew install eigen || true | |
| brew link --overwrite eigen || true | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install -U pip | |
| # Do these first to clarify potential conflicts | |
| pip install -U setuptools numpy | |
| # Standard dependencies | |
| pip install -U -r requirements.txt | |
| # Use pybind11-global to make CMake files visible | |
| pip install -U pybind11-global | |
| - name: Install remaining dependencies | |
| run: | | |
| pip install -U -r test_requirements.txt | |
| - name: List all installed packages for reference | |
| run: pip list | |
| - name: Build batoid | |
| run: CMAKE_VERBOSE_MAKEFILE=1 python setup.py develop | |
| - name: Run unit tests | |
| run: pytest --cov=batoid --cov-report=xml --cov-config tests/.coveragerc --skip_gha --durations=8 -ra | |
| - name: Upload coverage to codecov | |
| run: | | |
| pwd -P | |
| ls -la | |
| env | |
| coverage combine || true # (Not necessary I think, but just in case.) | |
| coverage report | |
| ls -la | |
| bash <(curl -s https://codecov.io/bash) | |
| - name: Pre-cache cleanup | |
| continue-on-error: true | |
| run: | | |
| # This was helpful in Travis. Not sure how important it is in GHA. | |
| rm -rfv $HOME/.cache/pip/log | |
| rm -rfv $HOME/.cache/pip/http | |
| if ${{ runner.os == 'macOS' }}; then brew cleanup || true; fi |