fix: Wrong cell area intensity calculation in InCellArea pipeline fun… #90
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| name: Release to Update Site | |
| on: | |
| push: | |
| branches: [main] # Trigger the workflow on push to the master branch | |
| release: | |
| types: [created] | |
| jobs: | |
| build_release: | |
| runs-on: ubuntu-latest | |
| container: | |
| image: mcr.microsoft.com/vscode/devcontainers/java:0-8 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v2 | |
| - name: Build with Docker | |
| run: ./build.sh | |
| - name: Upload EVAnalyzer.jar | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: EVAnalyzer | |
| path: | | |
| ./bin/EVAnalyzer.jar | |
| ./libs/evanalyzer | |
| retention-days: 2 | |
| depoly_release: | |
| if: github.event_name == 'release' && github.event.action == 'created' | |
| needs: build_release | |
| runs-on: ubuntu-latest | |
| env: | |
| IJ_DOWNLOAD_URL: https://downloads.imagej.net/fiji/latest/fiji-linux64.zip | |
| WIKI_USER: ${{ secrets.FIJI_SITES_USERNAME }} | |
| UPDATE_PASS: ${{ secrets.FIJI_SITES_PASSWORD }} | |
| UPDATE_SITE: evanalyzer | |
| steps: | |
| - name: Download build from step before | |
| uses: actions/download-artifact@v2 | |
| with: | |
| name: EVAnalyzer | |
| - name: Install ImageJ/Fiji | |
| run: | | |
| ls -l | |
| wget --no-check-certificate ${IJ_DOWNLOAD_URL} | |
| unzip fiji-linux64.zip | |
| - name: Update ImageJ | |
| run: | | |
| ./Fiji.app/ImageJ-linux64 --headless --update edit-update-site ${UPDATE_SITE} https://sites.imagej.net/${UPDATE_SITE}/ "webdav:${WIKI_USER}:${UPDATE_PASS}" . | |
| ./Fiji.app/ImageJ-linux64 --headless --update update | |
| - name: Release to ImageJ update site | |
| run: | | |
| cp ./bin/EVAnalyzer.jar ./Fiji.app/plugins/EVAnalyzer.jar | |
| mkdir -p ./Fiji.app/jars/evanalyzer | |
| cp -r ./libs/evanalyzer/* ./Fiji.app/jars/evanalyzer | |
| ./Fiji.app/ImageJ-linux64 --headless --update upload-complete-site --force ${UPDATE_SITE} |