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@jonas-fuchs jonas-fuchs released this 01 Dec 15:34
· 34 commits to master since this release
v.1.0
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Learn about vigilant mode.

NEW

  • added fasta output for primers
  • new workflow.png in the "How varVAMP works" section
  • renamed n_threads argument to threads

FIXES

  • renamed scores to penalties at several pos in the code to avoid confusion.
  • code reformatting and clearer documentation
  • more intuitive way of how polyX and polyXY are counted (prior three repeat was equal to the Primer setting MAX_POLYX = 3, but meant that stretches of e.g. 4 As were tolerated). Now the counting was adjusted so that MAX_POLYX = 4 is equal to the prior MAX_POLYX = 3.
  • renamed primer names in a more intuitive manner. The old primer names are now given as alternate names in the tsv.
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