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Fixing macos

Fixing macos #542

# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
name: MacOS Tests
on: [push, pull_request, workflow_dispatch]
jobs:
test-macos:
defaults:
run:
shell: bash -el {0}
name: Test CyRK on MacOS
runs-on: macos-latest
strategy:
fail-fast: false
matrix:
python-version:
- "3.8"
- "3.9"
- "3.10"
- "3.11"
- "3.12"
steps:
- uses: actions/checkout@v4
- uses: conda-incubator/setup-miniconda@v3
with:
activate-environment: cyrk_test
auto-update-conda: true
python-version: ${{ matrix.python-version }}
auto-activate-base: false
- name: Conda info
shell: bash -el {0}
run: conda info
- name: install gcc-12 # openMP does not play nice with clang on MacOS; also some versions of macos use older gcc so there is a need to install latest.
shell: bash -el {0}
run: |
brew install gcc@12
brew install llvm libomp
- name: Install package
shell: bash -el {0}
run: |
conda install pytest matplotlib numba numpy scipy cython
export CC=/opt/homebrew/opt/llvm/bin/clang
export CPPFLAGS="$CPPFLAGS -Xpreprocessor -fopenmp -I/opt/homebrew/opt/llvm/include"
python -m pip install -v .
- name: Run pytest
shell: bash -el {0}
run: pytest --capture=sys -v Tests/