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kalininalab

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  1. alphafold_non_docker alphafold_non_docker Public

    AlphaFold2 non-docker setup

    Shell 349 121

  2. DataSAIL DataSAIL Public

    DataSAIL is a tool to split datasets while reducing information leakage.

    Python 18 1

  3. metaprofi metaprofi Public

    MetaProFi is a bloom filter based tool for storing and querying sequence data for accurate identification of functionally relevant genetic variants

    Python 12 2

  4. GlyLES GlyLES Public

    A tool to convert IUPAC representations of glycans into SMILES strings.

    Python 12 6

  5. rinminer rinminer Public

    RINminer is a frequent subgraph mining tool based on the gSpan algorithm with additional features and optimizations for residue interaction networks (RINs).

    C 8

  6. spherecon spherecon Public

    This tool calculates a measure for relative solvent accessible area for single residues or whole amino acid chains.

    Python 3

Repositories

Showing 10 of 27 repositories
  • SMTB2024 Public
    kalininalab/SMTB2024’s past year of commit activity
    Python 1 1 1 2 Updated Dec 9, 2024
  • DataSAIL Public

    DataSAIL is a tool to split datasets while reducing information leakage.

    kalininalab/DataSAIL’s past year of commit activity
    Python 18 MIT 1 6 0 Updated Nov 29, 2024
  • StructMAn Public
    kalininalab/StructMAn’s past year of commit activity
    Python 0 LGPL-2.1 0 0 0 Updated Nov 14, 2024
  • GlyLES Public

    A tool to convert IUPAC representations of glycans into SMILES strings.

    kalininalab/GlyLES’s past year of commit activity
    Python 12 MIT 6 1 0 Updated Nov 6, 2024
  • ALPAR Public

    Single Reference Antimicrobial Resistance

    kalininalab/ALPAR’s past year of commit activity
    Python 1 MIT 0 5 0 Updated Nov 6, 2024
  • ProtPreTrain Public

    Protein structure pretraining

    kalininalab/ProtPreTrain’s past year of commit activity
    Python 0 0 0 0 Updated Nov 4, 2024
  • EpiPAMPAS Public

    Rapid detection of intra-protein epistasis via parsimonious ancestral state reconstruction and counting parallel mutations

    kalininalab/EpiPAMPAS’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Sep 11, 2024
  • NaturalPPLuM Public

    Repository of the paper "Exploring sequence landscape of biosynthetic gene clusters with protein language models" published at ICML2024 workshop Machine Learning for Life and Material Science: From Theory to Industry applications

    kalininalab/NaturalPPLuM’s past year of commit activity
    Jupyter Notebook 3 0 0 0 Updated Jul 26, 2024
  • LP-PDBBind Public Forked from THGLab/LP-PDBBind
    kalininalab/LP-PDBBind’s past year of commit activity
    Jupyter Notebook 0 3 0 0 Updated Feb 1, 2024
  • GraphPLI Public

    Structure-informed Prediction of Interactions of Lectins and Glycans

    kalininalab/GraphPLI’s past year of commit activity
    Python 0 0 0 0 Updated Nov 27, 2023

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