KBase Transform v0.1

More than meets the eye?

The KBase Transform service has responsibilities for 3 data tasks:

• Upload - Transforming data from external community formats to KBase typed data
• Download - Transforming KBase typed data into external community formats
• Convert - Transforming one KBase type to another KBase type

Scripts responsible for data validation, transformations, conversions are located in the plugins folder as well as a configuration file for each script.

Development

See plugins/examples and plugins/templates for making your own script for upload/download/convert.

Use a test driver script to demo the available functionality and data transformations.

git clone https://kbase.us/kbase/transform

cd transform/t/demo

# build a local virtualenv
python setup.py

# see some example data uploads
venv/bin/python bin/upload.py --demo

# read the docs for using your own data
venv/bin/python bin/upload.py --help