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Figures and tables in the back / annex section ignored #737

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de-code opened this issue Apr 14, 2021 · 4 comments · May be fixed by #738
Open

Figures and tables in the back / annex section ignored #737

de-code opened this issue Apr 14, 2021 · 4 comments · May be fixed by #738
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bug From Hemiptera and especially its suborder Heteroptera enhancement

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@de-code
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de-code commented Apr 14, 2021

This is related to #698

Some documents have main figures and supplementary figures.
If in those cases, the segmentation model labels the supplementary figures as annex,
then the content is passed separately to the fulltext model.
If the fulltext then correctly labels it as figure, then the figures from the annex are not included in the output.

@de-code
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de-code commented Apr 14, 2021

This seems to be due to FullTextParser processing figures and tables from the body only.

@lfoppiano
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@de-code do you have a Pdf for testing?

@de-code
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de-code commented Apr 16, 2021

One example is DOI 10.1101/306803 or 306803v1 (from the bioRxiv 10k validation dataset).
It has "Extended Data Figure 1" etc.
I haven't tested whether they are going to get extracted well with the default models.

@lfoppiano
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Hi @de-code (long time 😄), I stumbled upon this issue now, indeed it seems the tables in the back are not processed.
According to my understanding of the guidelines, they should be output in the annex, as they are annotated for the segmentation model.
The PR #963 is slowly gathering priority 😸

@lfoppiano lfoppiano added bug From Hemiptera and especially its suborder Heteroptera enhancement labels Dec 19, 2024
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