hmm

HMM

HMM(self, num_states, data_dim, hmm_type='fully-connected')

A Hidden Markov Model class on top of the Tensorflow library. At the moment, the class supports only Gaussian emission distributions. The class will also support discrete multivariate and Gaussian Mixture Models as emission distributions. The class is licensed under the MIT License.

posterior

HMM.posterior(self, data)

Runs the forward-backward algorithm in order to calculate the log-scale posterior probabilities.

Args: data: A numpy array with rank two or three.

Returns: A numpy array that contains the log-scale posterior probabilities of each time serie in data.

fit

HMM.fit(self, data, max_steps=100, batch_size=None, TOL=0.01, min_var=0.1, num_runs=1)

Implements the Baum-Welch fitting algorithm.

Args: data: A numpy array with rank two or three. max_steps: Maximum number of steps. batch_size: None or the number of batch size. TOL: The tolerance for stoping the training process. min_var: Minimum variance num_runs: Number of training realizations. The best of all model is to be kept.

Returns: True if converged, False otherwise.

run_viterbi

HMM.run_viterbi(self, data)

Implements the viterbi decoding algorithm.

Args: data: A numpy array of rank two or three represents the observed data.

Returns: A numpy array contains he most probable hidden state paths.

generate

HMM.generate(self, num_samples)

Generate simulated data from the model.

Args: num_samples: The number of samples of the generated data.

Returns: The numpy array of the generated sequence of observations.

save_model

HMM.save_model(self, filename)

Saves the model parameters to a numpy file

Args: filename: The path to a numppy .npz file where the model parameters will be saved.

load_model

HMM.load_model(self, filename)

Loads the model parameters from a numpy file

Args: filename: The path to a numpy .npz file where the model parameters have been stored.