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- Added opionated yaml linter to pre-commit hook and github action
  - Requires shell command to filter and exclude snakemake and snakebids
files
- Run yamlfix on all other yaml files

- Add gitignore
- Add bids_dir
- Adds necessary derivatives
  - dwi is doubled to perform two different tests (one for dwi_dir flag)
  - freesurfer directories / files

- ensure paths passed through are absolute (exception for testing)
- fix workflow issues

- add poe task for testing --responsemean_dir flag
- fixed responsemean call (expansion over subjects)

- Created check_dir_path function to check if user passed directories
are absolute paths. Throw an error otherwise
- Replace existing checks in freesurfer and mrtpipelines with function.

- Added dwi_flag for preprocessed data
- Added check to make sure absolute path is passed
- Added test data within prepdwi directory for testing purposes

- Added tpl and updated names for MNI152NLin6Asym
- Renamed MNI2009b -> MNI152NLin2009bAsym
- Removed unnecessary files
- Update config

- Update config to include tsv for subcortical labels

- Update freesurfer tsv to match bids spec
- Update file name of Freesurfer dseg tsv

- Add inputs to rule all for copying freesurfer and zona tsv files to
appropriate location

- Still need to fix piping of workflow, update entities, and filenames

- Adds in rule for labelmerge (needs updating with container and proper
command)
- Update resources with correct names and paths
- Add tsv to rule all for copying from resource to bids folders for
labelmerge
- Simplify rule all

Labelmerge