Add new func for spatial series #138
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name: Test conda env and run tests | |
on: | |
push: | |
schedule: # once a day at midnight UTC | |
- cron: '0 0 * * *' | |
jobs: | |
run-tests: | |
runs-on: ${{ matrix.os }} | |
defaults: | |
run: | |
shell: bash -l {0} | |
strategy: | |
matrix: | |
os: [ubuntu-latest] #, macos-latest, windows-latest] | |
env: | |
OS: ${{ matrix.os }} | |
PYTHON: '3.8' | |
steps: | |
- name: Cancel Workflow Action | |
uses: styfle/cancel-workflow-action@0.11.0 | |
with: | |
access_token: ${{ github.token }} | |
all_but_latest: true | |
- name: Checkout | |
uses: actions/checkout@v3 | |
- name: Set up Python | |
uses: actions/setup-python@v4 | |
with: | |
python-version: ${{ env.PYTHON }} | |
- name: Set up conda environment | |
uses: conda-incubator/setup-miniconda@v2 | |
with: | |
activate-environment: spyglass | |
environment-file: environment.yml | |
miniforge-variant: Mambaforge | |
miniforge-version: latest | |
- name: Install spyglass | |
run: | | |
pip install -e .[test] | |
- name: Download data | |
env: | |
UCSF_BOX_TOKEN: ${{ secrets.UCSF_BOX_TOKEN }} | |
UCSF_BOX_USER: ${{ secrets.UCSF_BOX_USER }} | |
WEBSITE: ftps://ftp.box.com/trodes_to_nwb_test_data/minirec20230622.nwb | |
RAW_DIR: /home/runner/work/spyglass/spyglass/tests/_data/raw/ | |
run: | | |
mkdir -p $RAW_DIR | |
wget --recursive --no-verbose --no-host-directories --no-directories \ | |
--user $UCSF_BOX_USER --password $UCSF_BOX_TOKEN \ | |
-P $RAW_DIR $WEBSITE | |
- name: Run tests | |
run: | | |
pytest -rP # env vars are set within certain tests |