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@kiharalab

Kihara Protein Bioinformatics Laboratory

Software developed in the Kihara Lab

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  1. ACC-UNet ACC-UNet Public

    ACC-UNet is A Completely Convolutional UNet model inspired from transformer-based UNets

    Python 104 14

  2. GNN_DOVE GNN_DOVE Public

    Code for "Protein Docking Model Evaluation by Graph Neural Networks"

    Python 58 22

  3. DOVE DOVE Public

    A Deep-learning based dOcking decoy eValuation mEthod

    Python 55 11

  4. DiffModeler DiffModeler Public

    DiffModeler: a diffusion model based protein complex structure modeling tool.

    Python 39 4

  5. CryoREAD CryoREAD Public

    CryoREAD: a computational tool using deep learning to automatically build full DNA/RNA atomic structure from cryo-EM map.

    Python 28 4

  6. Emap2secPlus Emap2secPlus Public

    Emap2sec+: Detecting Protein and DNA/RNA Structures in Cryo-EM Maps of Intermediate Resolution Using Deep Learning

    Jupyter Notebook 17 9

Repositories

Showing 10 of 44 repositories
  • DiffModeler Public

    DiffModeler: a diffusion model based protein complex structure modeling tool.

    kiharalab/DiffModeler’s past year of commit activity
    Python 39 4 0 0 Updated Nov 24, 2024
  • CryoREAD Public

    CryoREAD: a computational tool using deep learning to automatically build full DNA/RNA atomic structure from cryo-EM map.

    kiharalab/CryoREAD’s past year of commit activity
    Python 28 4 0 0 Updated Oct 14, 2024
  • GO2Sum_Server Public

    The code for GO2Sum server

    kiharalab/GO2Sum_Server’s past year of commit activity
    0 0 0 0 Updated Oct 1, 2024
  • kiharalab/ComplexModeler’s past year of commit activity
    Python 3 0 0 0 Updated Sep 7, 2024
  • DAQ Public

    DAQ: Residue-Wise Local Quality Estimation for Protein Models from Cryo-EM Maps

    kiharalab/DAQ’s past year of commit activity
    C 13 GPL-3.0 1 0 0 Updated Sep 6, 2024
  • DAQ-Refine Public
    kiharalab/DAQ-Refine’s past year of commit activity
    Jupyter Notebook 6 1 0 0 Updated Aug 28, 2024
  • AF2_Distaf Public Forked from google-deepmind/alphafold

    Embedding generation for Distance-AF using full MSA

    kiharalab/AF2_Distaf’s past year of commit activity
    Python 0 Apache-2.0 2,312 0 0 Updated Aug 21, 2024
  • ColabFoldDAQ Public Forked from sokrypton/ColabFold

    Making Protein folding accessible to all!

    kiharalab/ColabFoldDAQ’s past year of commit activity
    Jupyter Notebook 0 MIT 510 0 1 Updated Aug 17, 2024
  • DeepMainMast Public

    DeepMainmast

    kiharalab/DeepMainMast’s past year of commit activity
    C 11 GPL-3.0 2 0 1 Updated Aug 12, 2024
  • Emap2secPlus Public

    Emap2sec+: Detecting Protein and DNA/RNA Structures in Cryo-EM Maps of Intermediate Resolution Using Deep Learning

    kiharalab/Emap2secPlus’s past year of commit activity
    Jupyter Notebook 17 GPL-3.0 9 0 0 Updated Aug 1, 2024

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