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kircherlab

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  1. CADD-scripts CADD-scripts Public

    CADD scripts release for offline scoring. For more information about CADD, please visit our website

    Python 71 32

  2. cfDNA cfDNA Public

    cfDNA analysis workflow

    Python 20 6

  3. CADD-SV CADD-SV Public

    CADD-SV – a framework to score the effect of structural variants

    Python 14 3

  4. hemoMIPs hemoMIPs Public

    Automated analysis and result reporting for targeted sequencing data

    Python 7 3

  5. cfDNA-UniFlow cfDNA-UniFlow Public template

    Workflow for preprocessing cfDNA samples.

    Jupyter Notebook 4

  6. cfDNA_GCcorrection cfDNA_GCcorrection Public

    Python 4 1

Repositories

Showing 10 of 21 repositories
  • CADD-SV Public

    CADD-SV – a framework to score the effect of structural variants

    kircherlab/CADD-SV’s past year of commit activity
    Python 14 MIT 3 3 0 Updated Oct 30, 2024
  • IGVF_MPRA_seqspec_generator Public

    This little helper usues jinja2 and igvf_utils to generate seqspec files for mpra count and association data.

    kircherlab/IGVF_MPRA_seqspec_generator’s past year of commit activity
    Python 0 1 0 0 Updated Oct 30, 2024
  • BCalm Public
    kircherlab/BCalm’s past year of commit activity
    R 0 0 0 0 Updated Oct 29, 2024
  • MPRAsnakeflow Public

    new implementation of MPRAsnakeflow fork of MPRAflow

    kircherlab/MPRAsnakeflow’s past year of commit activity
    Python 3 MIT 5 5 3 Updated Oct 28, 2024
  • kircherlab.github.io Public

    Kircher Lab website

    kircherlab/kircherlab.github.io’s past year of commit activity
    HTML 1 0 0 0 Updated Oct 2, 2024
  • MPRAsnakeflow_tutorial Public
    kircherlab/MPRAsnakeflow_tutorial’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Sep 30, 2024
  • cfDNA-UniFlow Public template

    Workflow for preprocessing cfDNA samples.

    kircherlab/cfDNA-UniFlow’s past year of commit activity
    Jupyter Notebook 4 MIT 0 2 0 Updated Sep 24, 2024
  • CADD-scripts Public

    CADD scripts release for offline scoring. For more information about CADD, please visit our website

    kircherlab/CADD-scripts’s past year of commit activity
    Python 71 32 7 2 Updated Aug 23, 2024
  • MPRA_SaturationMutagenesis Public

    R Shiny website of the Saturation Mutagenesis manuscript

    kircherlab/MPRA_SaturationMutagenesis’s past year of commit activity
    R 3 GPL-3.0 2 2 1 Updated Aug 6, 2024
  • HowToTrainDNN Public

    Tutorial for IGVF-MPRA-Workshop-2024, Lübeck, Germany

    kircherlab/HowToTrainDNN’s past year of commit activity
    0 MIT 0 0 0 Updated Feb 20, 2024
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