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Assign multimappers randomly to one of the candidate mapping positions #359

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marcelm opened this issue Nov 13, 2023 · 0 comments · Fixed by #367
Closed

Assign multimappers randomly to one of the candidate mapping positions #359

marcelm opened this issue Nov 13, 2023 · 0 comments · Fixed by #367

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@marcelm
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marcelm commented Nov 13, 2023

(As discussed by e-mail.)

For reads with multiple equally good mapping locations, we currently always pick the first location.

To reduce biases, we should instead pick one of the locations randomly.
@marcelm marcelm mentioned this issue Nov 13, 2023
Merged
marcelm added a commit that referenced this issue Nov 13, 2023
@marcelm
Assign single-end multimappers randomly
6712c9c 
to one of the candidate mapping locations

See #359
@marcelm marcelm mentioned this issue Nov 13, 2023
Closed
marcelm added a commit that referenced this issue Nov 16, 2023
@marcelm
Assign single-end multimappers to a more random mapping site
76995c2 
by shuffling the top-scoring NAMs

See #359
marcelm added a commit that referenced this issue Nov 16, 2023
@marcelm
Assigning single-end multimappers more randomly to a mapping site
ec422ab 
by shuffling the top-scoring NAMs

See #359
marcelm added a commit that referenced this issue Nov 16, 2023
@marcelm
Assign single-end multimappers more randomly to a mapping site
f035021 
by shuffling the NAMs that all have the same best number of hits

See #359
marcelm added a commit that referenced this issue Nov 16, 2023
@marcelm
Choose random mapping locations for single-end multimappers
f9be9bb 
... by shuffling the NAMs that have the same score as the best one

See #359
marcelm added a commit that referenced this issue Nov 16, 2023
@marcelm
Choose random mapping locations for single-end multimappers
a30d779 
... by shuffling the NAMs that have the same score as the best one

See #359
@marcelm marcelm mentioned this issue Nov 16, 2023
Merged
marcelm added a commit that referenced this issue Nov 20, 2023
@marcelm
Pick one paired-end alignment randomly if there are multiple
bdd4a5b 
equally good ones

Closes #359
@marcelm marcelm mentioned this issue Nov 20, 2023
Merged
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Random paired-end alignment selection ksahlin/strobealign
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@marcelm